Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33784 Brassica carinata HOM05D003869 ORTHO05D004718 4.1e-209 731.1 354 100.0
C07p36960 Brassica napus HOM05D003869 ORTHO05D004718 4.1e-201 704.5 358 96.1
BolC7t44209H Brassica oleracea HOM05D003869 ORTHO05D004718 4.1e-201 704.5 358 96.1
A06p40890 Brassica napus HOM05D003869 ORTHO05D004718 2.8e-186 655.2 358 89.7
BraA06t27011Z Brassica rapa HOM05D003869 ORTHO05D004718 2.8e-186 655.2 358 89.7
C03p32370 Brassica napus HOM05D003869 ORTHO05D004718 2.3e-148 529.3 346 80.1
A03p26980 Brassica napus HOM05D003869 ORTHO05D004718 1.9e-142 509.6 364 74.2
BraA03t11909Z Brassica rapa HOM05D003869 ORTHO05D004718 7.6e-139 497.7 364 72.5
BcaB01g02998 Brassica carinata HOM05D003869 ORTHO05D004718 1.5e-134 483.4 364 71.4
Sp4g03710 Schrenkiella parvula HOM05D003869 ORTHO05D004718 2.0e-107 393.3 357 62.5
Thhalv10000613m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 5.0e-90 335.5 336 54.2
Thhalv10000175m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.2e-85 320.1 367 50.7
Thhalv10000192m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.9e-81 307.0 361 48.8
AL4G18540 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 9.4e-81 304.7 355 49.6
CARHR116870 Cardamine hirsuta HOM05D003869 ORTHO05D004718 8.0e-80 301.6 354 50.0
AL4G14520 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.4e-79 300.8 347 50.4
Carub.0004s0432 Capsella rubella HOM05D003869 ORTHO05D004718 4.4e-78 295.8 353 48.7
A04p19130 Brassica napus HOM05D003869 ORTHO05D004718 1.3e-77 294.3 359 47.9
Carub.0004s0426 Capsella rubella HOM05D003869 ORTHO05D004718 1.7e-77 293.9 342 50.3
AL4G15620 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.4e-76 290.0 350 47.7
Thhalv10000198m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.4e-76 290.0 343 49.0
A04p19140 Brassica napus HOM05D003869 ORTHO05D004718 7.0e-76 288.5 359 47.4
AL4G18550 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.0e-75 287.0 357 48.7
BraA04t17514Z Brassica rapa HOM05D003869 ORTHO05D004718 2.6e-75 286.6 359 47.1
Carub.0004s0433 Capsella rubella HOM05D003869 ORTHO05D004718 7.7e-75 285.0 350 48.3
C04p54520 Brassica napus HOM05D003869 ORTHO05D004718 1.7e-74 283.9 359 46.5
AL4G18480 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.9e-74 283.1 353 47.0
Thhalv10000166m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 3.8e-74 282.7 353 45.6
Carub.0004s0423 Capsella rubella HOM05D003869 ORTHO05D004718 6.5e-74 282.0 350 47.7
AL4G18560 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.1e-73 281.2 354 46.0
Carub.0004s0353 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-73 281.2 341 47.8
AL4G14510 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.9e-73 280.4 350 49.1
AT1G64840 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 1.9e-73 280.4 344 47.1
C04p53760 Brassica napus HOM05D003869 ORTHO05D004718 2.5e-73 280.0 344 45.3
BcaC02g08489 Brassica carinata HOM05D003869 ORTHO05D004718 3.2e-73 279.6 344 45.3
Carub.0004s0427 Capsella rubella HOM05D003869 ORTHO05D004718 3.2e-73 279.6 353 46.7
BcaB06g27998 Brassica carinata HOM05D003869 ORTHO05D004718 4.2e-73 279.3 357 47.1
BolC4t26931H Brassica oleracea HOM05D003869 ORTHO05D004718 4.2e-73 279.3 344 45.3
A04p19090 Brassica napus HOM05D003869 ORTHO05D004718 1.2e-72 277.7 347 46.7
Thhalv10019678m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.2e-72 277.7 344 47.1
BcaC02g08414 Brassica carinata HOM05D003869 ORTHO05D004718 1.6e-72 277.3 355 45.9
BolC4t26995H Brassica oleracea HOM05D003869 ORTHO05D004718 1.6e-72 277.3 355 45.9
BraA04t17507Z Brassica rapa HOM05D003869 ORTHO05D004718 2.1e-72 276.9 358 46.1
Carub.0004s0429 Capsella rubella HOM05D003869 ORTHO05D004718 6.1e-72 275.4 348 46.8
AL4G15500 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.4e-71 274.2 352 46.9
AL4G15660 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.8e-71 273.9 363 45.7
AL4G18510 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.5e-70 270.8 343 46.9
AT2G24250 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 7.5e-70 268.5 341 46.9
Carub.0004s0420 Capsella rubella HOM05D003869 ORTHO05D004718 1.7e-69 267.3 340 45.6
Carub.0004s0422 Capsella rubella HOM05D003869 ORTHO05D004718 1.4e-68 264.2 354 44.9
BcaB06g28007 Brassica carinata HOM05D003869 ORTHO05D004718 1.8e-68 263.8 359 46.8
BolC4t26932H Brassica oleracea HOM05D003869 ORTHO05D004718 2.7e-67 260.0 347 47.0
Thhalv10000199m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.2e-66 256.9 355 44.5
BolC4t26933H Brassica oleracea HOM05D003869 ORTHO05D004718 3.8e-66 256.1 349 46.7
BcaC02g08486 Brassica carinata HOM05D003869 ORTHO05D004718 1.5e-65 254.2 349 46.4
CARHR116990 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.5e-65 254.2 347 44.7
A04p18540 Brassica napus HOM05D003869 ORTHO05D004718 5.5e-65 252.3 350 46.3
BraA04t17462Z Brassica rapa HOM05D003869 ORTHO05D004718 5.5e-65 252.3 350 46.3
Thhalv10000460m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.2e-64 251.1 358 42.7
BcaB06g28002 Brassica carinata HOM05D003869 ORTHO05D004718 2.7e-64 250.0 358 43.6
C04p53780 Brassica napus HOM05D003869 ORTHO05D004718 6.1e-64 248.8 349 46.4
BraA04t17463Z Brassica rapa HOM05D003869 ORTHO05D004718 8.0e-64 248.4 344 46.8
C04p54430 Brassica napus HOM05D003869 ORTHO05D004718 1.4e-63 247.7 361 43.2
Sp4g03230 Schrenkiella parvula HOM05D003869 ORTHO05D004718 4.0e-63 246.1 360 43.1
CARHR118620 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.6e-62 243.4 356 42.7
Carub.0004s0430 Capsella rubella HOM05D003869 ORTHO05D004718 4.4e-62 242.7 348 43.4
CARHR117020 Cardamine hirsuta HOM05D003869 ORTHO05D004718 8.3e-61 238.4 348 42.0
CARHR117030 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.8e-60 237.3 323 44.6
Sp4g03220 Schrenkiella parvula HOM05D003869 ORTHO05D004718 5.4e-60 235.7 359 43.7
BolC4t26993H Brassica oleracea HOM05D003869 ORTHO05D004718 9.1e-60 235.0 367 42.2
A04p19110 Brassica napus HOM05D003869 ORTHO05D004718 2.0e-59 233.8 336 43.8
A04p19120 Brassica napus HOM05D003869 ORTHO05D004718 2.0e-59 233.8 351 44.2
BraA04t17509Z Brassica rapa HOM05D003869 ORTHO05D004718 2.0e-59 233.8 336 43.8
BcaC02g08418 Brassica carinata HOM05D003869 ORTHO05D004718 7.7e-59 231.9 336 43.8
Carub.0004s0354 Capsella rubella HOM05D003869 ORTHO05D004718 1.0e-58 231.5 354 42.4
BcaB06g28006 Brassica carinata HOM05D003869 ORTHO05D004718 3.8e-58 229.6 346 44.2
Thhalv10000675m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 4.2e-57 226.1 275 46.5
AL4G15555 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 7.2e-57 225.3 336 43.5
BcaC02g08422 Brassica carinata HOM05D003869 ORTHO05D004718 1.2e-56 224.6 352 40.3
C04p54410 Brassica napus HOM05D003869 ORTHO05D004718 1.2e-56 224.6 352 40.3
BcaB01g02713 Brassica carinata HOM05D003869 ORTHO05D004718 8.0e-56 221.9 351 40.5
BolC4t26987H Brassica oleracea HOM05D003869 ORTHO05D004718 5.2e-55 219.2 352 39.5
AL4G14530 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 6.8e-55 218.8 290 45.5
BcaC02g08416 Brassica carinata HOM05D003869 ORTHO05D004718 5.7e-54 215.7 352 41.5
C04p53770 Brassica napus HOM05D003869 ORTHO05D004718 2.2e-53 213.8 329 42.2
C04p54480 Brassica napus HOM05D003869 ORTHO05D004718 3.1e-52 209.9 337 39.5
A04p19070 Brassica napus HOM05D003869 ORTHO05D004718 1.2e-51 208.0 352 38.9
BcaB06g28005 Brassica carinata HOM05D003869 ORTHO05D004718 4.5e-51 206.1 325 40.9
BraA04t17506Z Brassica rapa HOM05D003869 ORTHO05D004718 4.5e-51 206.1 352 38.6
CARHR116880 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.2e-48 198.0 320 41.6
BcaB06g28001 Brassica carinata HOM05D003869 ORTHO05D004718 1.6e-48 197.6 273 44.3
BcaC02g08487 Brassica carinata HOM05D003869 ORTHO05D004718 4.4e-46 189.5 357 37.5
CARHR117230 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.8e-46 189.1 312 41.0
BcaC02g08420 Brassica carinata HOM05D003869 ORTHO05D004718 7.5e-46 188.7 359 37.9
C04p54420 Brassica napus HOM05D003869 ORTHO05D004718 9.8e-46 188.3 276 43.8
AL4G18500 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.7e-45 187.6 242 45.9
A04p18510 Brassica napus HOM05D003869 ORTHO05D004718 2.2e-45 187.2 333 39.3
AL4G15530 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 3.7e-45 186.4 247 45.7
CARHR116940 Cardamine hirsuta HOM05D003869 ORTHO05D004718 6.4e-45 185.7 340 38.2
A04p18500 Brassica napus HOM05D003869 ORTHO05D004718 1.4e-44 184.5 270 44.8
BcaC02g08419 Brassica carinata HOM05D003869 ORTHO05D004718 1.9e-44 184.1 280 42.5
BolC4t26992H Brassica oleracea HOM05D003869 ORTHO05D004718 1.9e-44 184.1 280 42.5
AL4G18570 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 5.6e-41 172.6 260 41.9
Carub.0004s0357 Capsella rubella HOM05D003869 ORTHO05D004718 1.8e-39 167.5 215 44.2
BraA04t17513Z Brassica rapa HOM05D003869 ORTHO05D004718 1.3e-37 161.4 212 46.7
A04p18490 Brassica napus HOM05D003869 ORTHO05D004718 1.7e-37 161.0 324 34.3
Carub.0004s0352 Capsella rubella HOM05D003869 ORTHO05D004718 1.7e-37 161.0 211 46.0
AL4G14540 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.9e-36 157.5 307 37.5
C04p54490 Brassica napus HOM05D003869 ORTHO05D004718 9.2e-36 155.2 207 44.9
CARHR117860 Cardamine hirsuta HOM05D003869 ORTHO05D004718 3.9e-34 149.8 276 38.0
CARHR117220 Cardamine hirsuta HOM05D003869 ORTHO05D004718 6.6e-34 149.1 183 45.9
C04p54500 Brassica napus HOM05D003869 ORTHO05D004718 7.3e-33 145.6 221 43.4
BcaC02g08488 Brassica carinata HOM05D003869 ORTHO05D004718 3.6e-32 143.3 141 54.6
AT2G24255 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 1.4e-31 141.4 351 35.6
BraA04t17464Z Brassica rapa HOM05D003869 ORTHO05D004718 2.6e-30 137.1 223 43.0
BolC4t26990H Brassica oleracea HOM05D003869 ORTHO05D004718 7.5e-30 135.6 208 41.8
CARHR116720 Cardamine hirsuta HOM05D003869 ORTHO05D004718 6.4e-29 132.5 163 46.6
A04p19100 Brassica napus HOM05D003869 ORTHO05D004718 5.4e-28 129.4 230 40.9
AL4G19670 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 4.6e-27 126.3 171 43.9
BraA04t17508Z Brassica rapa HOM05D003869 ORTHO05D004718 6.0e-27 125.9 216 41.2
Carub.0004s0424 Capsella rubella HOM05D003869 ORTHO05D004718 3.9e-26 123.2 225 38.2
AL4G15560 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.9e-25 120.9 152 48.0
BcaC02g08421 Brassica carinata HOM05D003869 ORTHO05D004718 2.8e-24 117.1 208 38.9
CARHR117880 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.0e-22 110.9 157 45.9
BcaB07g31773 Brassica carinata HOM05D003869 ORTHO05D004718 5.8e-22 109.4 336 29.5
BcaC04g23026 Brassica carinata HOM05D003869 ORTHO05D004718 7.6e-22 109.0 340 30.3
C09p12930 Brassica napus HOM05D003869 ORTHO05D004718 1.7e-21 107.8 340 30.3
BolC9t54184H Brassica oleracea HOM05D003869 ORTHO05D004718 1.7e-21 107.8 340 30.3
Sp3g29520 Schrenkiella parvula HOM05D003869 ORTHO05D004718 2.2e-21 107.5 332 30.1
A09p10960 Brassica napus HOM05D003869 ORTHO05D004718 2.9e-21 107.1 340 31.5
C09p12940 Brassica napus HOM05D003869 ORTHO05D004718 8.4e-21 105.5 329 30.7
BolC9t54185H Brassica oleracea HOM05D003869 ORTHO05D004718 8.4e-21 105.5 329 30.7
A09p10950 Brassica napus HOM05D003869 ORTHO05D004718 3.2e-20 103.6 326 29.4
C09p12950 Brassica napus HOM05D003869 ORTHO05D004718 1.6e-19 101.3 340 28.8
BolC9t54186H Brassica oleracea HOM05D003869 ORTHO05D004718 1.6e-19 101.3 340 28.8
BcaC04g23024 Brassica carinata HOM05D003869 ORTHO05D004718 2.1e-19 100.9 321 29.9
BraA04t17512Z Brassica rapa HOM05D003869 ORTHO05D004718 2.7e-19 100.5 90 53.3
CARHR116960 Cardamine hirsuta HOM05D003869 ORTHO05D004718 3.0e-18 97.1 187 36.9
AL4G15600 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 3.9e-18 96.7 200 35.0
BcaC04g23023 Brassica carinata HOM05D003869 ORTHO05D004718 3.9e-18 96.7 335 28.7
CARHR053970 Cardamine hirsuta HOM05D003869 ORTHO05D004718 3.9e-18 96.7 337 29.1
AL3G52380 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.9e-17 94.4 321 28.7
CARHR053960 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.6e-16 91.3 333 28.8
Sp3g29510 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.6e-16 91.3 325 28.6
CARHR116970 Cardamine hirsuta HOM05D003869 ORTHO05D004718 9.9e-14 82.0 103 44.7
COL.COLO4_18005 Corchorus olitorius HOM05D000151 ORTHO05D000074 9.9e-14 82.0 372 26.9
BraA09t36735Z Brassica rapa HOM05D003869 ORTHO05D004718 1.7e-13 81.3 221 31.2
BraA04t17461Z Brassica rapa HOM05D003869 ORTHO05D004718 2.9e-13 80.5 88 50.0
Eucgr.I01470 Eucalyptus grandis HOM05D000151 ORTHO05D000074 2.9e-13 80.5 323 27.6
Eucgr.I01467 Eucalyptus grandis HOM05D000151 ORTHO05D000074 4.9e-13 79.7 347 25.1
CARHR106540 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.1e-12 78.6 335 29.0
Eucgr.I01472 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.4e-12 78.2 331 26.0
THA.LOC104821381 Tarenaya hassleriana HOM05D000151 ORTHO05D011749 1.4e-12 78.2 335 26.9
Thecc.02G052700 Theobroma cacao HOM05D000151 ORTHO05D000074 1.4e-12 78.2 387 26.1
BolC4t26989H Brassica oleracea HOM05D003869 ORTHO05D004718 1.9e-12 77.8 69 55.1
Eucgr.I01474 Eucalyptus grandis HOM05D000151 ORTHO05D000074 4.2e-12 76.6 364 26.9
Duzib052G1153 Durio zibethinus HOM05D000151 ORTHO05D000074 7.1e-12 75.9 375 26.9
Eucgr.I01468 Eucalyptus grandis HOM05D000151 ORTHO05D000074 9.3e-12 75.5 335 27.8
Gorai.012G157500 Gossypium raimondii HOM05D000151 ORTHO05D000074 1.2e-11 75.1 360 25.6
Carub.0003s3004 Capsella rubella HOM05D003869 ORTHO05D004718 2.1e-11 74.3 371 27.8
Carub.0004s0356 Capsella rubella HOM05D003869 ORTHO05D004718 2.7e-11 73.9 96 44.8
DCAR_022831 Daucus carota HOM05D000151 ORTHO05D000074 2.7e-11 73.9 354 25.4
Gohir.D04G169400 Gossypium hirsutum HOM05D000151 ORTHO05D000074 2.7e-11 73.9 360 25.6
Gohir.A04G132412 Gossypium hirsutum HOM05D000151 ORTHO05D000074 4.6e-11 73.2 360 25.3
AL4G18490 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 7.8e-11 72.4 219 30.1
TAR628G0991 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-10 71.6 361 26.3
Sabra04G0121100 Salix brachista HOM05D000151 ORTHO05D000074 1.7e-10 71.2 361 25.8
COL.COLO4_18004 Corchorus olitorius HOM05D000151 ORTHO05D000074 2.3e-10 70.9 327 24.5
Haze_02069 Corylus avellana HOM05D000151 ORTHO05D000074 2.3e-10 70.9 365 26.6
Carub.0003s3003 Capsella rubella HOM05D003869 ORTHO05D004718 5.1e-10 69.7 354 26.6
FvH4_2g15930 Fragaria vesca HOM05D000151 ORTHO05D000074 5.1e-10 69.7 359 24.8
Sabra09G0108800 Salix brachista HOM05D000151 ORTHO05D000074 5.1e-10 69.7 356 24.4
Carub.0003s3002 Capsella rubella HOM05D003869 ORTHO05D004718 6.6e-10 69.3 367 24.3
Potri.004G179685 Populus trichocarpa HOM05D000151 ORTHO05D000074 6.6e-10 69.3 361 24.9
Carub.0006s2176 Capsella rubella HOM05D000151 ORTHO05D011749 5.6e-09 66.2 350 23.1
CSS0022996 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 7.3e-09 65.9 349 24.6
ECA246G4358 Erigeron canadensis HOM05D000151 ORTHO05D000074 7.3e-09 65.9 353 23.8
Thhalv10005528m.g Eutrema salsugineum HOM05D000151 ORTHO05D011749 7.3e-09 65.9 348 24.7
AL3G49860 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 2.8e-08 63.9 353 26.1
HanXRQChr15g0477851 Helianthus annuus HOM05D000151 ORTHO05D000074 2.8e-08 63.9 354 25.7
CARHR116710 Cardamine hirsuta HOM05D003869 ORTHO05D004718 6.2e-08 62.8 74 47.3
MSTRG.19960 Avicennia marina HOM05D000151 ORTHO05D000074 1.4e-07 61.6 351 25.9
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.8e-07 61.2 367 23.4
Gohir.D04G169200 Gossypium hirsutum HOM05D000151 ORTHO05D000074 2.4e-07 60.8 213 25.8
Ciclev10028612m.g Citrus clementina HOM05D000151 ORTHO05D000074 3.1e-07 60.5 219 26.0
Rhsim06G0010000 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.1e-07 60.5 366 24.9
CARHR116910 Cardamine hirsuta HOM05D003869 ORTHO05D004718 4.0e-07 60.1 73 45.2
Duzib132G0179 Durio zibethinus HOM05D000151 ORTHO05D000074 4.0e-07 60.1 343 23.3
CARHR116700 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.3e-07 59.7 55 54.5
Medtr3g058460 Medicago truncatula HOM05D000151 ORTHO05D000074 2.6e-06 57.4 334 24.6
CARHR117870 Cardamine hirsuta HOM05D003869 ORTHO05D004718 4.5e-06 56.6 49 53.1


User provided reference genes

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