Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33738 Brassica carinata HOM05D011028 ORTHO05D014935 1.5e-56 222.6 113 100.0
C07p37490 Brassica napus HOM05D011028 ORTHO05D014935 2.7e-45 185.3 105 91.4
AT5G66630 Arabidopsis thaliana HOM05D000909 ORTHO05D000928 5.7e-32 141.0 113 66.4
BcaB02g10007 Brassica carinata HOM05D000909 ORTHO05D014935 4.5e-29 131.3 113 61.1
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 1.0e-25 120.2 104 61.5
BolC7t43050H Brassica oleracea HOM05D000909 ORTHO05D000928 1.0e-25 120.2 104 61.5
BcaC06g34725 Brassica carinata HOM05D000909 ORTHO05D000928 1.4e-22 109.8 107 58.9
BcaB08g35062 Brassica carinata HOM05D011028 ORTHO05D014935 8.0e-18 94.0 113 46.9
THA.LOC104819226 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 1.3e-15 86.7 108 43.5
AL8G44500 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 2.0e-13 79.3 102 49.0
BcaB08g35058 Brassica carinata HOM05D011028 ORTHO05D014935 6.0e-13 77.8 86 48.8
A09p57610 Brassica napus HOM05D011028 ORTHO05D014935 1.0e-12 77.0 87 48.3
C08p40810 Brassica napus HOM05D011028 ORTHO05D014935 1.0e-12 77.0 87 48.3
BraA09t41153Z Brassica rapa HOM05D011028 ORTHO05D014935 1.0e-12 77.0 87 48.3
C07p36750 Brassica napus HOM05D000529 ORTHO05D000472 3.0e-12 75.5 99 44.4
BolC7t44191H Brassica oleracea HOM05D000529 ORTHO05D000472 3.0e-12 75.5 99 44.4
Thhalv10003662m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 3.0e-12 75.5 109 44.0
Carub.0008s2759 Capsella rubella HOM05D000529 ORTHO05D000472 3.9e-12 75.1 101 46.5
BcaC07g41077 Brassica carinata HOM05D011028 ORTHO05D014935 6.6e-12 74.3 79 50.6
AT5G66900 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 2.5e-11 72.4 102 45.1
A06p41020 Brassica napus HOM05D000529 ORTHO05D000472 4.3e-11 71.6 99 42.4
BraA06t27024Z Brassica rapa HOM05D000529 ORTHO05D000472 4.3e-11 71.6 99 42.4
BraA06t27026Z Brassica rapa HOM05D000529 ORTHO05D000472 4.3e-11 71.6 99 42.4
C07p36780 Brassica napus HOM05D000529 ORTHO05D000472 5.6e-11 71.2 99 43.4
C07p36720 Brassica napus HOM05D000529 ORTHO05D000472 7.3e-11 70.9 99 43.4
BolC7t44188H Brassica oleracea HOM05D000529 ORTHO05D000472 7.3e-11 70.9 99 43.4
A09p57620 Brassica napus HOM05D011028 ORTHO05D023997 9.5e-11 70.5 98 42.9
BraA09t41154Z Brassica rapa HOM05D011028 ORTHO05D023997 9.5e-11 70.5 98 42.9
BcaC06g33796 Brassica carinata HOM05D000529 ORTHO05D014935 1.2e-10 70.1 99 43.4
BcaC06g33798 Brassica carinata HOM05D011028 ORTHO05D014935 1.2e-10 70.1 99 43.4
Cpa.g.sc6.402 Carica papaya HOM05D000529 ORTHO05D000472 1.2e-10 70.1 98 39.8
BcaC04g23168 Brassica carinata HOM05D000529 ORTHO05D000472 1.6e-10 69.7 102 45.1
C09p11460 Brassica napus HOM05D000529 ORTHO05D000472 1.6e-10 69.7 102 45.1
Thhalv10005443m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.6e-10 69.7 99 42.4
Sp2g29750 Schrenkiella parvula HOM05D000529 ORTHO05D000472 1.6e-10 69.7 101 45.5
BcaB04g20245 Brassica carinata HOM05D000529 ORTHO05D000472 2.1e-10 69.3 77 51.9
C08p40820 Brassica napus HOM05D011028 ORTHO05D023997 2.1e-10 69.3 98 41.8
AT5G66910 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 2.8e-10 68.9 101 45.5
BcaB04g20089 Brassica carinata HOM05D000529 ORTHO05D000472 6.2e-10 67.8 102 45.1
BcaB08g34626 Brassica carinata HOM05D000529 ORTHO05D000472 8.1e-10 67.4 99 40.4
BcaC07g41078 Brassica carinata HOM05D011028 ORTHO05D023997 8.1e-10 67.4 98 40.8
A09p09670 Brassica napus HOM05D000529 ORTHO05D000472 8.1e-10 67.4 102 43.1
BolC8t51647H Brassica oleracea HOM05D011028 ORTHO05D023997 8.1e-10 67.4 98 40.8
BraA09t36615Z Brassica rapa HOM05D000529 ORTHO05D000472 8.1e-10 67.4 102 43.1
CARHR289030 Cardamine hirsuta HOM05D000529 ORTHO05D000472 8.1e-10 67.4 91 44.0
Dinv29950 Davidia involucrata HOM05D000529 ORTHO05D000472 1.1e-09 67.0 96 34.4
BcaC06g33794 Brassica carinata HOM05D000529 ORTHO05D000472 2.3e-09 65.9 99 42.4
RhsimUnG0071100 Rhododendron simsii HOM05D000529 ORTHO05D000472 2.3e-09 65.9 98 34.7
Thecc.01G050400 Theobroma cacao HOM05D000529 ORTHO05D000472 2.3e-09 65.9 104 33.7
BcaC04g23170 Brassica carinata HOM05D000529 ORTHO05D000472 5.2e-09 64.7 85 45.9
C09p11430 Brassica napus HOM05D000529 ORTHO05D000472 5.2e-09 64.7 85 45.9
BolC9t54031H Brassica oleracea HOM05D000529 ORTHO05D000472 5.2e-09 64.7 85 45.9
CSS0019496 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 5.2e-09 64.7 104 31.7
C02p64690 Brassica napus HOM05D000529 ORTHO05D000472 6.8e-09 64.3 90 43.3
BolC2t12531H Brassica oleracea HOM05D000529 ORTHO05D000472 6.8e-09 64.3 90 43.3
CSS0009849 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 6.8e-09 64.3 104 31.7
A06p36590 Brassica napus HOM05D000529 ORTHO05D000472 1.2e-08 63.5 99 40.4
BraA06t26585Z Brassica rapa HOM05D000529 ORTHO05D000472 1.2e-08 63.5 99 40.4
QL06p042829 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-08 63.5 101 35.6
A07p17000 Brassica napus HOM05D000529 ORTHO05D000472 2.0e-08 62.8 100 41.0
BraA07t29427Z Brassica rapa HOM05D000529 ORTHO05D000472 2.0e-08 62.8 100 41.0
QL06p043050 Quercus lobata HOM05D000529 ORTHO05D000472 2.6e-08 62.4 103 33.0
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 3.4e-08 62.0 96 36.5
BcaB02g09973 Brassica carinata HOM05D000529 ORTHO05D000472 3.4e-08 62.0 100 39.0
QL06p042786 Quercus lobata HOM05D000529 ORTHO05D000472 3.4e-08 62.0 101 34.7
QL06p042817 Quercus lobata HOM05D000529 ORTHO05D000472 3.4e-08 62.0 101 34.7
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 4.4e-08 61.6 96 36.5
Gorai.007G210000 Gossypium raimondii HOM05D000529 ORTHO05D000472 4.4e-08 61.6 101 32.7
Sp2g29760 Schrenkiella parvula HOM05D000529 ORTHO05D000472 7.5e-08 60.8 90 42.2
Cfa021022 Carpinus fangiana HOM05D000529 ORTHO05D010311 9.9e-08 60.5 97 33.0
BcaC02g08710 Brassica carinata HOM05D011028 ORTHO05D027594 1.3e-07 60.1 87 41.4
Duzib147G1638 Durio zibethinus HOM05D000529 ORTHO05D000472 1.3e-07 60.1 96 34.4
QL06p043096 Quercus lobata HOM05D000529 ORTHO05D000472 1.3e-07 60.1 103 32.0
QL06p043133 Quercus lobata HOM05D000529 ORTHO05D000472 1.3e-07 60.1 103 32.0
Ciclev10024907m.g Citrus clementina HOM05D000529 ORTHO05D000472 1.7e-07 59.7 99 35.4
Gohir.A11G189400 Gossypium hirsutum HOM05D000529 ORTHO05D000472 1.7e-07 59.7 101 31.7
Gohir.D11G196100 Gossypium hirsutum HOM05D000529 ORTHO05D000472 1.7e-07 59.7 101 31.7
QL04p095514 Quercus lobata HOM05D000083 ORTHO05D002708 1.7e-07 59.7 100 39.0
BcaB02g09974 Brassica carinata HOM05D000529 ORTHO05D000472 2.2e-07 59.3 77 48.1
Ciclev10018897m.g Citrus clementina HOM05D000529 ORTHO05D000472 2.2e-07 59.3 98 34.7
Lalb_Chr05g0226741 Lupinus albus HOM05D000529 ORTHO05D010311 2.2e-07 59.3 85 40.0
BraA02t08859Z Brassica rapa HOM05D000529 ORTHO05D000472 2.9e-07 58.9 76 44.7
Haze_15451 Corylus avellana HOM05D000529 ORTHO05D000472 2.9e-07 58.9 97 32.0
Thhalv10020099m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 2.9e-07 58.9 97 41.2
C07p24850 Brassica napus HOM05D000529 ORTHO05D000472 3.7e-07 58.5 99 39.4
BolC7t43013H Brassica oleracea HOM05D000529 ORTHO05D000472 3.7e-07 58.5 99 39.4
Cfa003970 Carpinus fangiana HOM05D000529 ORTHO05D000472 3.7e-07 58.5 97 30.9
Nn5g29352 Nelumbo nucifera HOM05D000529 ORTHO05D000472 3.7e-07 58.5 101 31.7
vmacro17917 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 3.7e-07 58.5 98 31.6
A02p38850 Brassica napus HOM05D000529 ORTHO05D000472 6.4e-07 57.8 76 43.4
FAN28G0545 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.4e-07 57.8 100 34.0
QL06p043260 Quercus lobata HOM05D000529 ORTHO05D000472 6.4e-07 57.8 99 34.3
vmacro17918 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 6.4e-07 57.8 98 33.7
BcaB04g20091 Brassica carinata HOM05D000529 ORTHO05D000472 1.1e-06 57.0 87 37.9
BcaC03g17818 Brassica carinata HOM05D000529 ORTHO05D000472 1.1e-06 57.0 76 43.4
C02p58420 Brassica napus HOM05D000529 ORTHO05D000472 1.1e-06 57.0 76 43.4
BolC2t11905H Brassica oleracea HOM05D000529 ORTHO05D027594 1.1e-06 57.0 76 43.4
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 1.1e-06 57.0 100 30.0
FvH4_1g15090 Fragaria vesca HOM05D000529 ORTHO05D000472 1.1e-06 57.0 100 34.0
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.4e-06 56.6 94 35.1
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 1.4e-06 56.6 83 41.0
A07p16990 Brassica napus HOM05D000529 ORTHO05D000472 1.9e-06 56.2 86 40.7
BolC7t44194H Brassica oleracea HOM05D000529 ORTHO05D000472 1.9e-06 56.2 89 39.3
Haze_15450 Corylus avellana HOM05D000529 ORTHO05D000472 2.4e-06 55.8 97 29.9
Duzib264G0157 Durio zibethinus HOM05D000529 ORTHO05D000472 2.4e-06 55.8 95 31.6
QL01p034712 Quercus lobata HOM05D000529 ORTHO05D000472 2.4e-06 55.8 98 35.7
QL06p042956 Quercus lobata HOM05D000529 ORTHO05D000472 2.4e-06 55.8 100 37.0
Nitab4.5_0009901g0030 Nicotiana tabacum HOM05D000529 ORTHO05D000472 3.2e-06 55.5 98 34.7
Dinv29949 Davidia involucrata HOM05D000529 ORTHO05D000472 4.1e-06 55.1 94 29.8
QL06p042852 Quercus lobata HOM05D000529 ORTHO05D000472 4.1e-06 55.1 101 31.7
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 5.4e-06 54.7 96 31.2
CiPaw.01G025000 Carya illinoinensis HOM05D000529 ORTHO05D000472 5.4e-06 54.7 95 35.8
QL06p043036 Quercus lobata HOM05D000529 ORTHO05D000472 5.4e-06 54.7 96 35.4
C07p36810 Brassica napus HOM05D000529 ORTHO05D000472 7.1e-06 54.3 89 38.2
CiPaw.01G024500 Carya illinoinensis HOM05D000529 ORTHO05D000472 7.1e-06 54.3 95 35.8
Duzib264G0020 Durio zibethinus HOM05D000529 ORTHO05D000472 9.2e-06 53.9 95 34.7


User provided reference genes

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