Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 1.7e-183 646.0 340 100.0
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 5.5e-163 577.8 316 98.4
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 1.8e-161 572.8 316 97.8
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 2.2e-151 539.3 317 93.7
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 2.2e-151 539.3 317 93.7
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 1.3e-148 530.0 314 91.4
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 8.6e-148 527.3 314 89.8
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 2.8e-146 522.3 318 84.6
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 2.6e-144 515.8 311 83.9
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 8.3e-143 510.8 315 88.3
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 4.6e-125 451.8 286 81.8
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 8.6e-124 447.6 312 72.8
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 1.3e-116 423.7 277 81.6
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 3.2e-110 402.5 318 66.7
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 4.2e-110 402.1 320 65.3
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 5.1e-108 395.2 320 64.4
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 2.1e-106 389.8 325 64.3
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 2.8e-106 389.4 325 64.3
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 4.8e-106 388.7 325 64.3
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 4.8e-106 388.7 319 64.3
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 6.2e-106 388.3 316 63.0
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 1.4e-105 387.1 315 64.4
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 1.4e-105 387.1 319 63.6
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 5.3e-105 385.2 313 62.3
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 6.9e-105 384.8 313 65.2
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 6.9e-105 384.8 310 65.5
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 4.4e-104 382.1 323 62.2
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 9.9e-104 380.9 323 62.2
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 9.9e-104 380.9 286 67.1
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 2.4e-102 376.3 319 63.0
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 7.1e-102 374.8 318 63.5
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 1.6e-101 373.6 318 61.3
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 1.6e-101 373.6 315 63.5
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 2.1e-101 373.2 306 63.7
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 2.1e-101 373.2 283 66.1
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 3.5e-101 372.5 312 62.2
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 4.6e-101 372.1 298 64.1
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 4.6e-101 372.1 298 64.1
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 7.9e-101 371.3 324 60.5
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.0e-100 370.9 313 64.2
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 2.3e-100 369.8 259 71.8
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.1e-99 367.5 337 58.8
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.5e-99 367.1 326 60.4
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.5e-99 367.1 263 69.6
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 3.3e-99 365.9 283 65.0
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 3.3e-99 365.9 315 61.6
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 3.3e-99 365.9 325 60.0
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 4.3e-99 365.5 328 58.8
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 5.6e-99 365.2 318 62.6
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 7.3e-99 364.8 316 64.6
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 7.3e-99 364.8 315 61.9
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 1.3e-98 364.0 314 60.2
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 2.8e-98 362.8 298 64.1
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 2.8e-98 362.8 317 60.9
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 2.8e-98 362.8 318 61.6
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 2.8e-98 362.8 319 65.8
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 3.6e-98 362.5 317 60.6
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.6e-98 362.5 314 59.9
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 6.2e-98 361.7 324 64.5
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 1.4e-97 360.5 283 63.6
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 2.4e-97 359.8 254 70.1
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.1e-97 359.4 317 59.6
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 4.0e-97 359.0 314 60.8
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 5.3e-97 358.6 316 65.5
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.2e-96 357.5 317 58.7
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 2.0e-96 356.7 320 62.2
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 2.6e-96 356.3 316 60.4
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 1.7e-95 353.6 312 59.9
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 8.4e-95 351.3 316 59.2
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 1.1e-94 350.9 315 58.1
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 2.4e-94 349.7 286 64.0
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 4.2e-94 349.0 292 63.7
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 9.3e-94 347.8 279 64.5
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 1.2e-93 347.4 319 59.2
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 1.6e-93 347.1 290 64.1
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 4.6e-93 345.5 303 58.4
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 6.0e-93 345.1 318 59.4
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 1.3e-92 344.0 288 60.1
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 3.0e-92 342.8 294 61.6
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 3.0e-92 342.8 258 66.7
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 7.4e-91 338.2 252 68.3
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 1.3e-90 337.4 207 76.8
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 3.7e-90 335.9 264 67.8
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 2.0e-88 330.1 306 56.5
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.5e-86 323.2 217 74.2
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 1.2e-85 320.9 340 53.5
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 2.7e-85 319.7 289 58.5
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.8e-84 317.0 295 57.3
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.1e-83 314.3 215 73.5
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.9e-83 313.5 197 76.6
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 2.5e-83 313.2 267 58.8
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 2.1e-82 310.1 288 60.1
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 1.1e-81 307.8 314 54.1
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.1e-77 293.5 176 78.4
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 1.3e-76 290.8 273 59.0
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 2.3e-76 290.0 176 81.2
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 7.4e-75 285.0 175 78.3
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 9.0e-73 278.1 230 62.2
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 3.2e-70 269.6 295 50.5
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.3e-67 259.6 180 72.8
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 1.3e-63 247.7 203 58.6
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 4.2e-62 242.7 209 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 9.4e-62 241.5 196 61.7
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 6.7e-60 235.3 209 57.4
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 2.6e-59 233.4 197 61.9
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 4.4e-59 232.6 201 60.2
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 2.9e-55 219.9 231 60.6
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.8e-49 200.7 206 51.0
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 2.7e-45 186.8 165 54.5
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 3.1e-41 173.3 200 43.5
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 3.1e-41 173.3 126 61.9
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 2.2e-39 167.2 213 41.3
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 7.2e-30 135.6 120 55.0
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.6e-29 134.4 89 69.7
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 6.8e-28 129.0 96 66.7
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 2.6e-27 127.1 86 74.4
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 9.5e-22 108.6 60 88.3
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 7.5e-19 99.0 68 76.5
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 4.9e-10 69.7 115 42.6
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 4.9e-10 69.7 37 86.5
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 5.6e-06 56.2 139 28.8


User provided reference genes

Program Settings