Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1476.1 777 100.0
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1469.1 777 99.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1469.1 777 99.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1424.8 784 96.0
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1424.8 784 96.0
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1411.0 784 95.4
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1365.1 790 91.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1347.8 789 90.5
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1305.8 793 86.8
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1240.3 779 85.0
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1228.8 777 84.2
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1216.1 777 83.8
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1197.2 784 81.4
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1196.4 785 81.4
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1191.8 778 82.0
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1189.1 785 81.0
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1175.6 784 80.1
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1162.9 791 79.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1147.1 779 80.2
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1117.8 785 75.4
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1102.4 793 74.1
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1093.2 790 73.8
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1090.5 786 73.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1086.6 803 72.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1086.2 782 72.3
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1082.0 791 72.9
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1075.8 754 76.0
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.1e-311 1073.2 766 73.4
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 4.8e-311 1070.8 784 72.4
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 6.4e-311 1070.5 785 72.7
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 1.2e-309 1066.2 786 73.0
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.2e-309 1066.2 786 71.6
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 2.6e-309 1065.1 790 72.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 1.3e-308 1062.8 796 71.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 798 70.8
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 2.2e-308 1062.0 784 73.3
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 2.2e-308 1062.0 776 72.6
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 8.4e-308 1060.1 786 72.4
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.9e-307 1058.9 786 72.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 2.4e-307 1058.5 782 73.0
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 9.3e-307 1056.6 785 72.1
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 1.2e-306 1056.2 802 70.7
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 786 72.4
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.0e-306 1053.9 793 71.4
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 7.8e-306 1053.5 789 71.5
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 3.0e-305 1051.6 778 72.2
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 3.3e-304 1048.1 784 71.7
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 4.3e-304 1047.7 783 70.9
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 7.3e-304 1047.0 857 68.1
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 7.3e-304 1047.0 781 71.8
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 9.6e-304 1046.6 832 68.3
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.3e-303 1046.2 793 70.4
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.6e-303 1045.8 778 71.7
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 2.4e-302 1042.0 787 71.7
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 4.0e-302 1041.2 785 71.5
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 9.0e-302 1040.0 790 71.1
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.5e-301 1039.3 792 70.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 2.6e-301 1038.5 785 70.7
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 3.4e-301 1038.1 779 71.5
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 3.4e-301 1038.1 775 72.0
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 9.9e-301 1036.6 787 70.5
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 1.1e-299 1033.1 789 70.5
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 9.3e-299 1030.0 792 70.2
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 4.6e-298 1027.7 795 69.9
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 1.0e-297 1026.5 775 70.3
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 7.4e-296 1020.4 793 69.2
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 2.8e-295 1018.5 785 68.5
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 1.1e-294 1016.5 833 66.9
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.8e-294 1015.8 792 69.3
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.1e-291 1006.5 778 68.4
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 7.1e-291 1003.8 782 69.1
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 2.1e-290 1002.3 811 67.1
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.0e-290 1000.7 790 68.2
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-289 1000.0 645 83.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 6.7e-289 997.3 788 68.0
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 6.7e-289 997.3 770 67.5
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.1e-288 996.5 660 78.2
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.5e-288 995.3 777 68.7
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 4.8e-287 991.1 786 67.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.1e-286 989.9 780 68.1
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 9.0e-286 986.9 800 67.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 1.5e-285 986.1 779 66.6
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 3.4e-285 984.9 790 67.5
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 4.5e-285 984.6 771 68.6
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.3e-284 983.0 794 65.7
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.7e-284 982.6 793 65.8
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.9e-283 979.2 778 67.7
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 7.1e-283 977.2 761 69.5
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 6.0e-282 974.2 885 62.7
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 5.7e-280 967.6 788 66.2
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 6.3e-279 964.1 784 65.2
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 4.1e-278 961.4 785 65.9
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 3.4e-277 958.4 786 65.6
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.7e-274 948.7 778 64.5
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 7.9e-274 947.2 786 64.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 6.7e-273 944.1 777 67.3
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 2.5e-272 942.2 634 76.7
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.3e-272 941.8 777 65.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 9.7e-272 940.3 634 77.4
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.1e-270 934.9 634 76.8
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 9.1e-270 933.7 780 64.9
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.0e-261 906.0 793 63.9
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 4.2e-259 898.3 824 60.2
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.3e-255 886.7 784 60.7
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.1e-251 873.6 784 62.1
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.5e-251 872.5 779 62.4
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.4e-249 866.7 794 59.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 4.4e-240 835.1 807 57.2
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-230 803.1 762 56.2
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.6e-228 794.3 714 63.7
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 9.5e-227 790.8 807 55.9
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.0e-225 787.3 778 57.6
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 9.2e-206 721.1 664 61.6
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.2e-198 696.0 793 50.2
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.6e-189 667.2 479 73.7
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.3e-185 652.1 830 47.2
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.3e-185 652.1 830 47.2
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 7.1e-174 615.1 854 44.4
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.9e-172 609.4 818 45.7
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.2e-158 563.1 531 60.3
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 7.2e-158 562.0 401 76.6
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.8e-156 557.4 643 50.7
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.8e-156 557.4 457 64.6
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 5.7e-155 552.4 825 41.6
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-153 547.7 602 58.1
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 4.2e-150 536.2 432 66.0
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.6e-149 533.1 607 51.9
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 6.1e-149 532.3 572 54.0
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 2.2e-138 497.3 616 53.6
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.6e-102 376.3 701 40.8
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 3.1e-92 344.0 462 49.6
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 5.1e-79 300.1 217 74.2
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 3.9e-71 273.9 758 30.5
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 5.1e-71 273.5 199 71.4
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.3e-69 268.9 243 62.1
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 2.8e-69 267.7 786 33.2
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 6.9e-68 263.1 189 72.0
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-67 262.3 189 72.0
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-67 262.3 189 72.0
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 4.5e-59 233.8 201 62.7
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 5.3e-52 210.3 511 35.8
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 9.7e-46 189.5 144 68.8
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.1e-39 167.2 109 71.6
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.0e-34 152.9 203 46.8
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 9.4e-33 146.4 85 82.4
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.4e-33 146.4 358 31.8
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.8e-31 139.8 128 59.4
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 9.7e-30 136.3 74 85.1
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.7e-29 135.6 142 50.7
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.8e-29 134.8 80 73.8
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.1e-28 129.8 75 73.3
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.1e-28 129.8 75 73.3
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-24 117.9 75 82.7
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-18 99.4 140 49.3
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.5e-17 95.1 107 43.9
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.7e-16 91.7 57 84.2
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.1e-16 90.5 107 48.6
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.1e-16 90.5 84 53.6
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 3.0e-15 88.2 60 68.3
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 4.0e-15 87.8 108 55.6
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.3e-13 82.8 59 64.4
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.4e-12 79.3 100 47.0
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 2.4e-12 78.6 52 84.6
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.2e-11 76.3 65 58.5
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 4.5e-11 74.3 52 80.8
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 2.2e-10 72.0 51 78.4
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.1e-09 69.7 65 64.6
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.5e-09 68.6 78 53.8
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 3.2e-09 68.2 76 55.3
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 3.0e-07 61.6 106 39.6
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.0e-07 61.2 246 27.6


User provided reference genes

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