Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33710 Brassica carinata HOM05D014792 ORTHO05D017397 4.4e-32 140.6 67 100.0
C07p38430 Brassica napus HOM05D014792 ORTHO05D017397 6.4e-31 136.7 65 100.0
C05p32740 Brassica napus HOM05D014792 ORTHO05D017397 2.3e-28 128.3 65 93.8
BolC5t32006H Brassica oleracea HOM05D014792 ORTHO05D017397 2.3e-28 128.3 65 93.8
A07p14620 Brassica napus HOM05D014792 ORTHO05D017397 3.9e-28 127.5 64 93.8
BraA02t06430Z Brassica rapa HOM05D014792 ORTHO05D017397 5.1e-28 127.1 64 93.8
A02p13720 Brassica napus HOM05D014792 ORTHO05D017397 1.5e-27 125.6 64 92.2
A07p07620 Brassica napus HOM05D014792 ORTHO05D008410 6.2e-18 93.6 46 93.5
BcaC06g33790 Brassica carinata HOM05D014792 ORTHO05D039982 2.4e-17 91.7 49 89.8
C07p36850 Brassica napus HOM05D014792 ORTHO05D039982 2.4e-17 91.7 49 89.8
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 5.1e-12 73.9 42 78.6
BcaC07g40632 Brassica carinata HOM05D003039 ORTHO05D008410 5.1e-12 73.9 42 78.6
A09p53410 Brassica napus HOM05D003039 ORTHO05D008410 5.1e-12 73.9 42 78.6
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 5.1e-12 73.9 42 78.6
BolC8t51204H Brassica oleracea HOM05D003039 ORTHO05D008410 5.1e-12 73.9 42 78.6
BraA09t40767Z Brassica rapa HOM05D003039 ORTHO05D008410 5.1e-12 73.9 42 78.6
AT3G61360 Arabidopsis thaliana HOM05D003039 ORTHO05D008410 1.1e-11 72.8 42 76.2
CARHR171700 Cardamine hirsuta HOM05D003039 ORTHO05D008410 1.9e-11 72.0 42 76.2
Aa31LG9G15670 Aethionema arabicum HOM05D003039 ORTHO05D008410 2.5e-11 71.6 42 73.8
Carub.0005s2803 Capsella rubella HOM05D003039 ORTHO05D008410 4.3e-11 70.9 52 59.6
AL1G53570 Arabidopsis lyrata HOM05D003039 ORTHO05D017397 9.6e-11 69.7 42 73.8
A04p01150 Brassica napus HOM05D003039 ORTHO05D017397 2.2e-07 58.5 38 65.8
BraA04t15832Z Brassica rapa HOM05D003039 ORTHO05D008410 2.2e-07 58.5 38 65.8
FvH4_7g04300 Fragaria vesca HOM05D003039 ORTHO05D008410 1.1e-06 56.2 42 57.1
FAN06G2480 Fragaria x ananassa HOM05D003039 ORTHO05D008410 1.1e-06 56.2 42 57.1
FAN10G1410 Fragaria x ananassa HOM05D003039 ORTHO05D008410 1.1e-06 56.2 42 57.1
Thecc.06G053600 Theobroma cacao HOM05D003039 ORTHO05D008410 1.4e-06 55.8 41 58.5
Atru.chr4.952 Acer truncatum HOM05D003039 ORTHO05D008410 2.5e-06 55.1 42 57.1
CSS0033889 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 3.2e-06 54.7 42 54.8
RcHm_v2.0_Chr1g0329261 Rosa chinensis HOM05D003039 ORTHO05D008410 3.2e-06 54.7 42 54.8
VMungo0016G0002 Vigna mungo HOM05D003039 ORTHO05D008410 3.2e-06 54.7 41 51.2
VMungo1383G1437 Vigna mungo HOM05D003039 ORTHO05D008410 3.2e-06 54.7 41 51.2
CANSAT78G1923 Cannabis sativa HOM05D003039 ORTHO05D008410 4.2e-06 54.3 38 60.5
Duzib235G1487 Durio zibethinus HOM05D003039 ORTHO05D008410 5.5e-06 53.9 41 53.7
Hma1.2p1_0178F.1_g078560 Hydrangea macrophylla HOM05D003039 ORTHO05D008410 5.5e-06 53.9 41 58.5
CSS0020082 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 7.1e-06 53.5 42 52.4
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 7.1e-06 53.5 38 60.5
Lj1P893G46 Lonicera japonica HOM05D003039 ORTHO05D008410 9.3e-06 53.1 40 55.0


User provided reference genes

Program Settings