Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 7.3e-162 573.9 312 100.0
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 2.4e-96 356.3 257 77.0
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 7.0e-96 354.8 336 64.3
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 7.0e-96 354.8 336 64.3
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 3.0e-75 286.2 402 50.5
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.7e-70 270.4 374 51.1
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 1.6e-60 237.3 359 47.9
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 1.6e-60 237.3 359 47.9
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 6.2e-60 235.3 364 47.3
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 6.2e-60 235.3 364 47.3
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 1.2e-58 231.1 357 46.2
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 4.7e-52 209.1 365 43.3
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 6.2e-52 208.8 402 40.8
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 1.8e-51 207.2 397 45.3
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 2.3e-51 206.8 377 43.0
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 2.0e-50 203.8 344 44.5
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 2.7e-47 193.4 364 42.9
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 2.5e-37 160.2 373 39.1
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 4.3e-37 159.5 392 37.0
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 7.9e-31 138.7 395 35.2
BolC7t44342H Brassica oleracea HOM05D005710 ORTHO05D004657 1.3e-30 137.9 101 76.2
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 3.3e-29 133.3 345 34.8
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 1.1e-24 118.2 345 35.9
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 4.2e-24 116.3 338 35.5
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 4.2e-24 116.3 338 35.5
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 2.8e-20 103.6 342 33.3
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 3.2e-16 90.1 276 32.6
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 7.9e-15 85.5 131 46.6
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 1.0e-14 85.1 84 60.7
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 2.3e-14 84.0 131 44.3
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.3e-14 84.0 146 43.2
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 1.5e-13 81.3 158 39.9
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.5e-13 81.3 217 33.6
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 2.5e-13 80.5 176 35.8
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 2.5e-13 80.5 219 33.3
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 3.3e-13 80.1 213 35.7
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 3.3e-13 80.1 253 30.8
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 3.3e-13 80.1 220 34.5
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 3.3e-13 80.1 246 32.9
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 5.7e-13 79.3 144 41.7
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 5.7e-13 79.3 216 34.7
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 5.7e-13 79.3 192 37.5
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 7.4e-13 79.0 146 42.5
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.3e-12 78.2 176 36.4
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.6e-12 77.8 124 41.1
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 1.6e-12 77.8 183 36.1
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 2.2e-12 77.4 214 33.2
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 2.8e-12 77.0 129 38.8
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.8e-12 77.0 254 32.7
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 6.3e-12 75.9 179 35.2
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 8.2e-12 75.5 194 36.1
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 8.2e-12 75.5 143 39.9
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 8.2e-12 75.5 223 32.7
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.4e-11 74.7 197 36.0
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 2.4e-11 73.9 260 33.1
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 3.1e-11 73.6 183 35.5
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 4.1e-11 73.2 168 36.9
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 9.0e-11 72.0 241 33.6
AL3G48400 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.2e-10 71.6 44 79.5
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 2.0e-10 70.9 125 41.6
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.0e-10 70.9 152 39.5
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.0e-10 70.9 152 39.5
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 2.6e-10 70.5 193 34.2
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 2.6e-10 70.5 213 32.4
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 4.5e-10 69.7 116 44.0
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 4.5e-10 69.7 124 41.9
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 5.9e-10 69.3 222 32.4
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 5.9e-10 69.3 203 31.5
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 5.9e-10 69.3 247 32.8
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 5.9e-10 69.3 124 38.7
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 7.6e-10 68.9 127 37.8
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.0e-09 68.6 149 36.2
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.3e-09 68.2 236 28.0
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 1.7e-09 67.8 146 35.6
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 2.2e-09 67.4 149 35.6
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.2e-09 67.4 149 34.9
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 2.9e-09 67.0 154 35.7
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 3.8e-09 66.6 193 31.6
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 3.8e-09 66.6 82 46.3
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 3.8e-09 66.6 126 40.5
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 5.0e-09 66.2 125 37.6
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 5.0e-09 66.2 260 31.2
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 6.5e-09 65.9 144 38.9
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 8.5e-09 65.5 114 42.1
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 3.2e-08 63.5 208 29.3
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 3.2e-08 63.5 151 35.8
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 4.2e-08 63.2 256 31.6
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 5.5e-08 62.8 155 32.9
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 5.5e-08 62.8 166 30.7
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 7.2e-08 62.4 223 33.2
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 7.2e-08 62.4 82 47.6
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 1.6e-07 61.2 144 34.0
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 2.1e-07 60.8 214 31.8
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 2.7e-07 60.5 256 28.9
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 3.6e-07 60.1 188 32.4
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 4.6e-07 59.7 166 33.1
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 7.9e-07 58.9 206 28.2
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 1.0e-06 58.5 187 31.6
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.8e-06 57.8 233 26.6
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 2.3e-06 57.4 80 43.8
SalBow3G1747 Salvia bowleyana HOM05D005710 ORTHO05D004657 3.0e-06 57.0 108 34.3
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 3.9e-06 56.6 253 28.9
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 5.1e-06 56.2 137 37.2
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 6.7e-06 55.8 152 31.6


User provided reference genes

Program Settings