Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33677 Brassica carinata HOM05D006813 ORTHO05D008657 1.4e-226 789.3 402 100.0
C07p38090 Brassica napus HOM05D006813 ORTHO05D008657 1.9e-223 778.9 402 97.3
BolC7t44331H Brassica oleracea HOM05D006813 ORTHO05D008657 1.9e-223 778.9 402 97.3
A06p40070 Brassica napus HOM05D006813 ORTHO05D008657 8.7e-216 753.4 404 95.0
BraA06t26922Z Brassica rapa HOM05D006813 ORTHO05D008657 8.7e-216 753.4 404 95.0
BcaC06g30887 Brassica carinata HOM05D006813 ORTHO05D008657 4.9e-211 737.6 404 94.1
Sp2g17800 Schrenkiella parvula HOM05D006813 ORTHO05D008657 1.8e-200 702.6 403 88.8
Thhalv10004355m.g Eutrema salsugineum HOM05D006813 ORTHO05D008657 3.1e-197 691.8 402 86.8
AT3G29185 Arabidopsis thaliana HOM05D006813 ORTHO05D008657 2.4e-189 665.6 403 83.1
AL5G19100 Arabidopsis lyrata HOM05D006813 ORTHO05D008657 1.5e-188 662.9 402 82.6
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 4.7e-177 624.8 401 78.3
CARHR152350 Cardamine hirsuta HOM05D006813 ORTHO05D008657 7.0e-165 584.3 406 75.4
THA.LOC104805490 Tarenaya hassleriana HOM05D006813 ORTHO05D008657 3.8e-163 578.6 406 73.2
Manes.02G049900 Manihot esculenta HOM05D006813 ORTHO05D008657 9.5e-146 520.8 365 70.1
TWI34G0739 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 9.5e-146 520.8 345 71.9
TWI34G0213 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 3.6e-145 518.8 345 72.2
CSS0013443 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 8.9e-144 514.2 388 66.5
CSS0034099 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 2.0e-143 513.1 413 63.9
Sabra04G0067300 Salix brachista HOM05D006813 ORTHO05D008657 2.9e-142 509.2 377 66.6
Cfa007604 Carpinus fangiana HOM05D006813 ORTHO05D008657 6.4e-142 508.1 407 64.1
Haze_14484 Corylus avellana HOM05D006813 ORTHO05D008657 8.3e-142 507.7 360 69.2
Medtr6g013150 Medicago truncatula HOM05D006813 ORTHO05D008657 2.4e-141 506.1 347 72.3
Nn4g23302 Nelumbo nucifera HOM05D006813 ORTHO05D008657 5.4e-141 505.0 375 67.7
TAR371G1040 Trochodendron aralioides HOM05D006813 ORTHO05D008657 5.4e-141 505.0 365 67.9
Potri.004G120900 Populus trichocarpa HOM05D006813 ORTHO05D008657 7.0e-141 504.6 375 66.7
Lalb_Chr02g0159111 Lupinus albus HOM05D006813 ORTHO05D008657 2.0e-140 503.1 346 69.9
QL02p085115 Quercus lobata HOM05D006813 ORTHO05D008657 3.5e-140 502.3 419 64.0
Cc07_g03730 Coffea canephora HOM05D006813 ORTHO05D008657 1.0e-139 500.7 371 66.6
MSTRG.3341 Avicennia marina HOM05D006813 ORTHO05D008657 1.3e-139 500.4 351 69.5
VMungo0464G0720 Vigna mungo HOM05D006813 ORTHO05D008657 1.3e-139 500.4 405 64.0
PGR004G2573 Punica granatum HOM05D006813 ORTHO05D008657 1.7e-139 500.0 410 64.1
Thecc.04G088600 Theobroma cacao HOM05D006813 ORTHO05D008657 8.6e-139 497.7 407 63.9
MD09G1056700 Malus domestica HOM05D006813 ORTHO05D008657 1.1e-138 497.3 413 62.2
Sc14g0006120 Simmondsia chinensis HOM05D006813 ORTHO05D008657 1.1e-138 497.3 358 66.2
arahy.Tifrunner.gnm1.ann1.DSSH0H Arachis hypogaea HOM05D006813 ORTHO05D008657 1.5e-138 496.9 346 69.1
Nitab4.5_0000568g0240 Nicotiana tabacum HOM05D006813 ORTHO05D008657 1.5e-138 496.9 392 63.5
Ciclev10013781m.g Citrus clementina HOM05D006813 ORTHO05D008657 4.3e-138 495.4 359 67.7
arahy.Tifrunner.gnm1.ann1.GGC6H3 Arachis hypogaea HOM05D006813 ORTHO05D008657 5.6e-138 495.0 349 68.5
Atru.chr8.345 Acer truncatum HOM05D006813 ORTHO05D008657 7.3e-138 494.6 401 63.1
Nitab4.5_0001591g0010 Nicotiana tabacum HOM05D006813 ORTHO05D008657 7.3e-138 494.6 399 61.9
RcHm_v2.0_Chr2g0166981 Rosa chinensis HOM05D006813 ORTHO05D008657 9.5e-138 494.2 408 64.0
FvH4_6g47790 Fragaria vesca HOM05D006813 ORTHO05D008657 1.2e-137 493.8 353 69.4
FAN14G3538 Fragaria x ananassa HOM05D006813 ORTHO05D008657 1.2e-137 493.8 353 69.4
Gohir.A05G369200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 1.2e-137 493.8 380 66.1
Gorai.012G051400 Gossypium raimondii HOM05D006813 ORTHO05D008657 1.2e-137 493.8 395 64.1
Glyma.13G060100 Glycine max HOM05D006813 ORTHO05D008657 3.6e-137 492.3 402 63.7
Actinidia06110 Actinidia chinensis HOM05D006813 ORTHO05D008657 4.7e-137 491.9 348 67.5
Gohir.D04G046200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 4.7e-137 491.9 395 64.1
Solyc02g088350.4 Solanum lycopersicum HOM05D006813 ORTHO05D008657 6.2e-137 491.5 392 63.3
Glyma.19G026800 Glycine max HOM05D006813 ORTHO05D008657 8.0e-137 491.1 348 69.5
Phvul.004G032400 Phaseolus vulgaris HOM05D006813 ORTHO05D008657 8.0e-137 491.1 402 63.7
CiPaw.03G021100 Carya illinoinensis HOM05D006813 ORTHO05D008657 1.8e-136 490.0 357 67.5
SalBow1G5727 Salvia bowleyana HOM05D006813 ORTHO05D008657 4.0e-136 488.8 387 65.4
Psat1g069960 Pisum sativum HOM05D006813 ORTHO05D008657 6.8e-136 488.0 385 62.6
Lj2g0012161 Lotus japonicus HOM05D006813 ORTHO05D008657 8.9e-136 487.6 397 63.7
Sopen02g033040 Solanum pennellii HOM05D006813 ORTHO05D008657 1.2e-135 487.3 392 62.5
PGSC0003DMG400001435 Solanum tuberosum HOM05D006813 ORTHO05D008657 1.2e-135 487.3 392 62.8
EL10Ac2g03036 Beta vulgaris HOM05D006813 ORTHO05D008657 1.5e-135 486.9 407 62.2
CAN.G206.184 Capsicum annuum HOM05D006813 ORTHO05D008657 2.0e-135 486.5 394 62.4
SGA_v2.0_scaffold154G37082 Striga asiatica HOM05D006813 ORTHO05D008657 5.8e-135 485.0 391 63.9
ECA232G0359 Erigeron canadensis HOM05D006813 ORTHO05D008657 1.7e-134 483.4 389 61.7
Lsat_1_v5_gn_4_170001 Lactuca sativa HOM05D006813 ORTHO05D008657 1.7e-134 483.4 404 61.1
MD17G1054200 Malus domestica HOM05D006813 ORTHO05D008657 1.7e-134 483.4 440 58.9
Aqoxy3G03517 Aquilegia oxysepala HOM05D006813 ORTHO05D008657 2.2e-134 483.0 344 68.3
HanXRQChr09g0264041 Helianthus annuus HOM05D006813 ORTHO05D008657 2.9e-134 482.6 388 63.4
Carub.0005s0792 Capsella rubella HOM05D006813 ORTHO05D008657 8.3e-134 481.1 256 90.6
AUR62034457 Chenopodium quinoa HOM05D006813 ORTHO05D008657 1.1e-133 480.7 346 67.9
GSVIVG01011472001 Vitis vinifera HOM05D006813 ORTHO05D008657 1.9e-133 479.9 406 62.1
MELO3C022015.2 Cucumis melo HOM05D006813 ORTHO05D008657 5.4e-133 478.4 395 62.8
Duzib264G0095 Durio zibethinus HOM05D006813 ORTHO05D008657 1.2e-132 477.2 407 61.9
CsaV3_5G038340 Cucumis sativus L. HOM05D006813 ORTHO05D008657 1.6e-132 476.9 395 63.0
Migut.K01297 Erythranthe guttata HOM05D006813 ORTHO05D008657 3.5e-132 475.7 383 62.9
CANSAT64G1527 Cannabis sativa HOM05D006813 ORTHO05D008657 4.6e-132 475.3 398 61.6
Rhsim10G0035200 Rhododendron simsii HOM05D006813 ORTHO05D008657 1.7e-131 473.4 345 65.5
MBI07_g46965_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 3.0e-131 472.6 356 65.2
ClCG11G004590 Citrullus lanatus HOM05D006813 ORTHO05D008657 3.9e-131 472.2 405 61.5
DCAR_025399 Daucus carota HOM05D006813 ORTHO05D008657 5.0e-131 471.9 367 61.6
PSO063G1088 Papaver somniferum HOM05D006813 ORTHO05D008657 6.6e-131 471.5 351 65.8
PSO063G3583 Papaver somniferum HOM05D006813 ORTHO05D008657 1.6e-129 466.8 350 65.4
Actinidia01957 Actinidia chinensis HOM05D006813 ORTHO05D008657 2.1e-129 466.5 348 64.1
Hund13179 Selenicereus undatus HOM05D006813 ORTHO05D008657 1.8e-128 463.4 422 57.8
Peaxi162Scf00166g00933 Petunia axillaris HOM05D006813 ORTHO05D008657 2.3e-128 463.0 321 69.8
Dinv33795 Davidia involucrata HOM05D006813 ORTHO05D008657 4.0e-128 462.2 312 70.5
Lju41A8T104 Lonicera japonica HOM05D006813 ORTHO05D008657 2.6e-127 459.5 368 63.3
HPP92_015887 Vanilla planifolia HOM05D006813 ORTHO05D008657 3.4e-127 459.1 366 62.0
vmacro05678 Vaccinium macrocarpon HOM05D006813 ORTHO05D008657 2.9e-126 456.1 347 64.3
AUR62018125 Chenopodium quinoa HOM05D006813 ORTHO05D008657 1.1e-125 454.1 324 69.4
COL.COLO4_12242 Corchorus olitorius HOM05D006813 ORTHO05D008657 1.9e-125 453.4 320 68.4
CDE04G0700 Ceratophyllum demersum HOM05D006813 ORTHO05D008657 7.1e-125 451.4 365 60.0
Os03g0758900 Oryza sativa ssp. japonica HOM05D006813 ORTHO05D008657 2.1e-124 449.9 347 64.0
ATR0730G176 Amborella trichopoda HOM05D006813 ORTHO05D008657 6.0e-124 448.4 350 62.9
Zm00001eb057930 Zea mays HOM05D006813 ORTHO05D008657 1.2e-121 440.7 347 64.3
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 1.7e-118 430.3 394 58.6
Oeu023718.1 Olea europaea HOM05D006813 ORTHO05D008657 3.5e-116 422.5 333 64.3
TPR.G26959 Trifolium pratense HOM05D006813 ORTHO05D008657 2.3e-115 419.9 299 69.9
Zm00001eb214510 Zea mays HOM05D006813 ORTHO05D008657 1.5e-111 407.1 350 59.1
Sed0010301 Sechium edule HOM05D006813 ORTHO05D008657 3.5e-100 369.4 248 71.8
Dinv11496 Davidia involucrata HOM05D006813 ORTHO05D008657 7.9e-100 368.2 287 62.7
Prupe.3G262000 Prunus persica HOM05D006813 ORTHO05D008657 7.9e-100 368.2 248 71.0
FAN05G4860 Fragaria x ananassa HOM05D006813 ORTHO05D008657 3.8e-94 349.4 361 56.0
SEGI_06128 Sequoiadendron giganteum HOM05D006813 ORTHO05D008657 3.8e-94 349.4 371 48.0
SalBow1G0723 Salvia bowleyana HOM05D006813 ORTHO05D008657 5.5e-93 345.5 292 63.0
MBI07_g25549_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 3.2e-85 319.7 285 57.9
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 2.1e-84 317.0 417 45.8
Haze_14493 Corylus avellana HOM05D006813 ORTHO05D008657 9.0e-80 301.6 207 70.0
Pp3c27_2000 Physcomitrium patens HOM05D006813 ORTHO05D008657 8.5e-78 295.0 346 43.4
Mapoly0015s0143 Marchantia polymorpha HOM05D006813 ORTHO05D008657 6.9e-72 275.4 341 42.8
BcaC06g30885 Brassica carinata HOM05D006813 ORTHO05D008657 6.7e-67 258.8 127 97.6
SMO347G0068 Selaginella moellendorffii HOM05D006813 ORTHO05D008657 6.3e-65 252.3 348 39.1
HPP92_015898 Vanilla planifolia HOM05D006813 ORTHO05D008657 6.7e-59 232.3 188 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3657 Anthoceros agrestis HOM05D006813 ORTHO05D008657 1.2e-34 151.8 177 45.8
MD09G1057100 Malus domestica HOM05D006813 ORTHO05D008657 5.7e-34 149.4 147 53.1
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 7.5e-34 149.1 159 51.6
TPR.G26199 Trifolium pratense HOM05D006813 ORTHO05D001332 4.5e-31 139.8 101 69.3
SalBow1G7870 Salvia bowleyana HOM05D006813 ORTHO05D008657 5.0e-30 136.3 91 71.4
HPP92_015897 Vanilla planifolia HOM05D006813 ORTHO05D008657 3.0e-27 127.1 114 59.6
HanXRQChr08g0223741 Helianthus annuus HOM05D006813 ORTHO05D008657 1.2e-20 105.1 85 61.2
ECA247G1425 Erigeron canadensis HOM05D006813 ORTHO05D008657 3.3e-13 80.5 51 68.6
TAR633G2432 Trochodendron aralioides HOM05D006813 ORTHO05D414814 1.9e-08 64.7 96 39.6


User provided reference genes

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