Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 6.0e-37 157.1 88 100.0
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 6.0e-37 157.1 88 100.0
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 6.0e-37 157.1 88 100.0
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 6.0e-37 157.1 88 100.0
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 1.1e-33 146.4 88 94.3
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 1.1e-33 146.4 88 94.3
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 1.9e-30 135.6 88 89.8
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 3.2e-30 134.8 88 86.4
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 3.2e-30 134.8 88 86.4
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 1.1e-27 126.3 88 84.1
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 1.3e-26 122.9 88 80.7
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 1.6e-26 122.5 88 83.0
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 4.8e-26 120.9 88 81.8
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 4.8e-26 120.9 88 81.8
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 2.4e-25 118.6 88 80.7
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 9.0e-25 116.7 88 77.3
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 1.2e-24 116.3 88 78.4
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 2.0e-24 115.5 88 78.4
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 2.0e-24 115.5 88 78.4
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 4.5e-24 114.4 88 76.1
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.9e-23 111.7 88 78.4
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.0e-20 103.2 85 72.9
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 1.1e-17 93.2 88 64.8
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 6.9e-17 90.5 86 68.6
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 1.7e-15 85.9 57 77.2
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 7.4e-11 70.5 52 71.2
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 2.2e-10 68.9 53 69.8
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 3.7e-10 68.2 52 69.2
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 3.7e-10 68.2 52 69.2
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 3.7e-10 68.2 53 66.0
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 4.8e-10 67.8 52 67.3
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 4.8e-10 67.8 52 71.2
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 4.8e-10 67.8 52 67.3
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 1.4e-09 66.2 52 67.3
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 1.8e-09 65.9 48 72.9
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 1.8e-09 65.9 64 57.8
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 2.4e-09 65.5 51 66.7
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 4.1e-09 64.7 52 67.3
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 9.1e-09 63.5 50 68.0
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 2.0e-08 62.4 50 58.0
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 2.0e-08 62.4 52 63.5
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 3.4e-08 61.6 52 57.7
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 5.9e-08 60.8 53 60.4
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 5.9e-08 60.8 52 59.6
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 61.5
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 61.5
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 1.3e-07 59.7 51 62.7
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 2.2e-07 58.9 52 59.6
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.8e-07 58.2 52 63.5
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.8e-07 58.2 52 63.5
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 5.0e-07 57.8 52 57.7
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 8.5e-07 57.0 52 57.7
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.4e-06 56.2 52 61.5
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 1.9e-06 55.8 52 53.8
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 2.5e-06 55.5 52 59.6
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 4.2e-06 54.7 50 52.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 4.2e-06 54.7 50 52.0
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 5.5e-06 54.3 48 62.5
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 9.4e-06 53.5 45 62.2


User provided reference genes

Program Settings