Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 7.7e-141 503.8 260 100.0
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 4.7e-130 468.0 258 93.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 8.9e-129 463.8 258 92.6
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 3.9e-124 448.4 258 91.9
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 9.5e-123 443.7 258 91.5
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-108 395.6 252 84.5
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 5.1e-108 394.8 273 80.6
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-107 392.9 273 80.6
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 3.6e-106 388.7 261 82.4
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-103 380.2 258 82.2
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 5.1e-100 368.2 282 74.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-99 366.7 282 74.1
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 3.3e-99 365.5 282 73.8
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 3.3e-99 365.5 282 73.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.3e-99 365.2 282 74.1
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 7.3e-99 364.4 282 73.8
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.4e-97 360.1 282 73.0
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 5.3e-97 358.2 282 72.7
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 3.8e-95 352.1 282 70.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 5.4e-94 348.2 282 70.6
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 7.1e-94 347.8 282 70.6
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 9.3e-94 347.4 282 69.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 6.2e-90 334.7 261 74.3
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-89 334.0 282 67.4
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-89 333.6 282 67.7
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-89 333.6 282 67.7
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-89 333.6 282 67.7
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.0e-88 329.7 286 66.8
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 2.3e-84 316.2 324 59.6
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.8e-79 298.9 280 59.3
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 8.4e-79 297.7 253 70.0
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 3.2e-78 295.8 284 59.9
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 5.5e-78 295.0 282 58.5
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 7.1e-78 294.7 280 59.3
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 7.1e-78 294.7 280 59.3
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 7.1e-78 294.7 279 59.1
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 9.3e-78 294.3 280 59.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 2.1e-77 293.1 280 58.6
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 6.0e-77 291.6 282 57.4
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 7.9e-77 291.2 282 58.2
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.8e-76 290.0 282 57.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.3e-76 289.7 282 57.8
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 3.9e-76 288.9 282 57.4
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 3.9e-76 288.9 282 57.1
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 5.1e-76 288.5 282 56.7
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 5.1e-76 288.5 282 57.4
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 6.7e-76 288.1 282 57.4
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 8.7e-76 287.7 282 57.4
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 8.7e-76 287.7 282 57.4
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.5e-75 287.0 282 56.4
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.5e-75 286.2 282 56.0
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.3e-75 285.8 277 58.1
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 3.3e-75 285.8 282 57.4
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 4.3e-75 285.4 282 57.4
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 7.4e-75 284.6 282 57.1
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 7.4e-75 284.6 282 57.4
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 9.7e-75 284.3 282 57.1
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 9.7e-75 284.3 282 57.1
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 9.7e-75 284.3 279 57.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.3e-74 283.9 282 56.7
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-74 283.9 293 55.3
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.6e-74 283.5 282 56.7
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.6e-74 283.5 282 56.7
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.6e-74 283.5 282 56.7
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.6e-74 283.5 282 56.7
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.1e-74 283.1 277 58.1
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.1e-74 283.1 282 57.8
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 2.8e-74 282.7 282 56.7
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 3.7e-74 282.3 277 58.1
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.8e-74 282.0 282 56.4
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 6.3e-74 281.6 282 56.4
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 8.2e-74 281.2 282 56.4
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 8.2e-74 281.2 282 56.4
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.4e-73 280.4 282 56.4
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.4e-73 279.6 281 56.2
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 5.3e-73 278.5 247 66.4
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 5.3e-73 278.5 279 56.6
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.2e-72 277.3 282 57.1
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.6e-72 276.2 280 57.1
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 5.9e-72 275.0 277 56.7
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 5.9e-72 275.0 275 57.1
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 5.9e-72 275.0 282 54.3
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 7.6e-72 274.6 282 55.3
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.7e-71 273.5 277 56.3
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 2.2e-71 273.1 277 55.6
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 5.0e-71 271.9 276 57.2
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 5.0e-71 271.9 277 56.0
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 6.5e-71 271.6 277 56.3
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 6.5e-71 271.6 277 56.7
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.1e-70 270.8 277 55.6
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.1e-70 270.8 312 51.3
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.1e-70 270.8 279 54.5
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.4e-70 270.4 282 54.6
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.4e-70 270.4 282 54.6
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.9e-70 270.0 282 54.6
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 2.5e-70 269.6 277 56.3
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.2e-70 269.2 282 55.0
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 5.5e-70 268.5 279 54.8
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.2e-69 267.3 277 55.2
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.6e-69 265.8 277 55.2
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 6.1e-69 265.0 277 54.9
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 6.1e-69 265.0 277 54.9
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 6.1e-69 265.0 277 54.9
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 6.1e-69 265.0 277 54.2
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 7.9e-69 264.6 276 54.7
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.8e-68 263.5 277 54.9
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.3e-68 263.1 286 52.4
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.5e-67 260.4 276 54.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.5e-67 259.6 290 51.7
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 4.3e-67 258.8 282 52.5
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.8e-66 256.1 277 54.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 8.2e-66 254.6 277 52.7
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.1e-65 254.2 288 52.4
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 7.7e-64 248.1 274 53.3
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 3.8e-63 245.7 165 79.4
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.1e-62 244.2 277 51.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 2.5e-62 243.0 274 51.8
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.2e-62 242.7 340 45.3
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.1e-61 240.0 277 50.2
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.6e-61 238.8 277 50.5
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 7.9e-61 238.0 279 49.1
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.0e-60 237.7 327 45.9
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.0e-60 236.1 371 42.0
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 5.1e-60 235.3 277 50.2
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 6.7e-60 235.0 306 52.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.1e-57 227.6 274 49.6
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.1e-57 227.6 237 55.7
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.9e-55 219.5 269 49.1
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 8.5e-55 218.0 262 48.9
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.1e-54 217.6 277 45.8
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.2e-53 214.2 173 64.2
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.2e-53 214.2 173 64.2
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.0e-52 211.1 269 47.6
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-52 210.7 282 44.3
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 6.7e-52 208.4 249 49.8
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.3e-51 206.1 277 44.8
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.2e-50 203.4 252 49.6
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 4.8e-50 202.2 275 45.1
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.4e-49 200.7 169 62.1
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.2e-48 197.6 271 43.9
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.6e-48 196.4 271 43.5
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 7.7e-48 194.9 272 44.1
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.8e-44 183.7 279 40.9
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 8.8e-44 181.4 117 75.2
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 3.1e-41 172.9 258 42.2
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.5e-40 169.1 259 44.8
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 6.5e-39 165.2 247 44.5
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.9e-38 163.7 245 43.3
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.3e-34 151.0 114 69.3
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.8e-34 149.1 118 66.9
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.7e-32 143.3 116 62.1
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 8.9e-28 128.3 160 50.6
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.4e-27 125.9 157 48.4
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-26 123.6 107 69.2
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-26 123.6 82 82.9
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.8e-26 123.2 76 78.9
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.9e-26 122.5 100 68.0
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.0e-24 117.1 108 59.3
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.9e-23 113.2 169 43.8
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.6e-21 107.5 103 55.3
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 7.5e-19 98.6 157 41.4
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-17 94.7 52 94.2
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-17 94.4 52 92.3
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-17 94.4 52 92.3
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 3.2e-17 93.2 52 92.3
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-16 90.9 52 90.4
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 6.0e-16 89.0 50 90.0
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 3.0e-15 86.7 69 62.3
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.9e-15 86.3 71 63.4
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.3e-14 82.8 59 71.2
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 9.5e-14 81.6 266 27.4
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.6e-13 80.9 270 25.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.8e-13 80.1 57 68.4
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.7e-13 79.3 72 55.6
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 4.7e-13 79.3 72 55.6
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.1e-12 78.2 72 55.6
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 3.1e-12 76.6 68 58.8
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.2e-12 75.9 72 52.8
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 7.5e-11 72.0 51 70.6
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 1.3e-10 71.2 262 27.9
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 1.1e-09 68.2 146 34.2
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 2.4e-09 67.0 80 48.8
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.3e-07 61.2 40 77.5


User provided reference genes

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