Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 3.9e-176 621.3 304 100.0
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 7.6e-172 607.1 304 98.4
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 7.6e-172 607.1 304 98.4
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 9.3e-170 600.1 304 97.4
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 1.0e-168 596.7 304 96.4
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 4.8e-166 587.8 304 95.1
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.8e-165 585.9 304 96.1
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 5.3e-165 584.3 304 93.8
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.4e-162 576.2 305 93.4
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 2.7e-161 572.0 304 91.8
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 1.1e-159 566.6 304 92.1
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 3.3e-159 565.1 304 90.1
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 4.3e-159 564.7 304 89.8
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 5.6e-159 564.3 304 90.1
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 9.6e-159 563.5 304 89.8
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 2.1e-158 562.4 305 91.5
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 5.5e-154 547.7 292 93.5
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 1.5e-143 513.1 317 82.6
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.5e-143 513.1 293 83.6
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-140 503.1 305 84.6
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.5e-140 503.1 305 84.6
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.8e-136 489.6 302 79.1
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 5.1e-136 488.0 302 78.5
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 2.0e-135 486.1 301 78.7
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 2.0e-135 486.1 302 78.1
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.4e-135 485.0 302 77.8
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 5.7e-135 484.6 298 78.2
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 9.7e-135 483.8 305 77.4
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 4.1e-133 478.4 304 75.0
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.5e-132 476.5 328 74.7
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.5e-132 476.5 306 74.5
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.6e-132 475.7 285 77.2
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 4.5e-132 474.9 294 76.2
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 7.7e-132 474.2 279 79.6
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.0e-131 473.8 296 76.0
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.0e-131 473.8 307 73.9
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 3.8e-131 471.9 299 75.3
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 5.0e-131 471.5 306 72.5
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 8.5e-131 470.7 299 75.3
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 8.5e-131 470.7 295 75.6
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 8.5e-131 470.7 298 74.5
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.9e-130 469.5 299 75.6
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 4.2e-130 468.4 284 76.1
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 4.2e-130 468.4 296 76.4
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 5.5e-130 468.0 306 72.5
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 7.2e-130 467.6 298 75.8
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.6e-129 466.5 303 74.9
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.7e-129 465.7 298 74.2
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 3.6e-129 465.3 305 73.4
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 6.1e-129 464.5 302 73.2
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.8e-128 463.0 295 73.6
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 1.8e-128 463.0 297 75.4
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 3.0e-128 462.2 299 72.9
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.9e-128 461.8 295 76.3
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 5.2e-128 461.5 304 74.0
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 6.7e-128 461.1 302 71.9
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 6.7e-128 461.1 305 74.1
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.1e-127 460.3 298 74.8
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.5e-127 459.9 295 74.6
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.5e-127 459.9 299 73.2
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 5.7e-127 458.0 279 78.5
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.2e-126 456.1 290 75.9
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 2.8e-126 455.7 283 75.3
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 4.8e-126 454.9 291 75.3
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 4.8e-126 454.9 304 73.0
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.4e-125 453.4 260 81.9
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.8e-125 453.0 299 73.2
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 3.1e-125 452.2 304 72.4
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.2e-124 450.3 304 71.7
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 1.2e-124 450.3 295 71.2
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 7.7e-124 447.6 322 69.3
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.0e-123 447.2 296 71.3
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 1.7e-123 446.4 274 77.0
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 6.5e-123 444.5 305 70.5
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.2e-122 442.2 284 75.0
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 5.5e-122 441.4 282 74.1
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 7.2e-122 441.0 301 71.8
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 9.4e-122 440.7 295 70.8
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 2.1e-121 439.5 294 69.7
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 2.1e-121 439.5 295 69.2
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 6.1e-121 438.0 294 69.4
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.0e-120 437.2 304 70.1
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.4e-120 436.8 297 70.0
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 2.3e-120 436.0 295 70.5
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.5e-119 433.3 295 69.2
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 7.5e-119 431.0 316 67.1
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 1.1e-117 427.2 303 67.7
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 2.2e-115 419.5 399 55.9
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 5.0e-115 418.3 280 71.1
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.1e-114 417.2 278 71.2
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 2.1e-113 412.9 287 69.7
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 2.8e-110 402.5 291 67.7
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 2.7e-108 396.0 272 69.1
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 4.5e-108 395.2 261 72.0
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 2.1e-105 386.3 246 75.6
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 6.1e-105 384.8 239 75.3
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 4.0e-104 382.1 296 65.2
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 8.6e-99 364.4 295 61.4
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 8.0e-97 357.8 249 69.5
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.3e-96 356.3 212 81.1
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 4.4e-95 352.1 310 57.1
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 4.1e-93 345.5 211 79.1
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.3e-90 335.9 282 61.3
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 7.3e-90 334.7 202 77.2
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 8.0e-89 331.3 202 75.7
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 7.5e-87 324.7 243 67.9
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.1e-85 320.9 257 64.2
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.1e-72 277.7 304 51.6
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 2.7e-68 263.1 269 49.4
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 3.0e-67 259.6 202 63.4
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 3.4e-63 246.1 258 47.7
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 2.9e-62 243.0 270 51.5
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 3.8e-54 216.1 173 61.3
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.4e-53 214.2 292 47.3
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 6.0e-52 208.8 262 44.7
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 4.3e-50 202.6 128 71.9
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 3.8e-46 189.5 146 65.8
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 3.7e-41 172.9 108 78.7
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 6.2e-41 172.2 97 83.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 1.2e-36 157.9 162 55.6
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 5.1e-35 152.5 100 72.0
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.6e-33 147.5 81 80.2
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 3.6e-28 129.8 66 81.8
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.3e-14 84.7 56 71.4
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 2.2e-14 84.0 67 61.2
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 1.2e-07 61.6 33 78.8
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 1.6e-07 61.2 35 74.3
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 7.7e-07 58.9 57 56.1
A06p15030 Brassica napus HOM05D006150 ORTHO05D096911 1.7e-06 57.8 28 92.9


User provided reference genes

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