Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 5.9e-25 116.7 58 100.0
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 5.9e-25 116.7 58 100.0
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 7.3e-23 109.8 58 94.8
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 1.6e-22 108.6 58 94.8
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 3.6e-22 107.5 58 93.1
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 4.7e-22 107.1 58 93.1
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 1.4e-21 105.5 58 91.4
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 1.4e-21 105.5 55 94.5
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 1.4e-21 105.5 55 94.5
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 1.4e-21 105.5 55 94.5
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 3.1e-21 104.4 58 91.4
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 4.0e-21 104.0 59 93.2
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 5.2e-21 103.6 58 91.4
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 1.2e-20 102.4 58 89.7
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 1.2e-20 102.4 58 89.7
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 1.2e-20 102.4 58 89.7
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 6.0e-17 90.1 58 79.3
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 1.3e-16 89.0 55 80.0
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 1.7e-16 88.6 57 77.2
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.1e-15 85.9 58 74.1
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 1.1e-15 85.9 59 72.9
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 1.5e-15 85.5 57 77.2
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 2.1e-14 81.6 54 74.1
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 2.1e-14 81.6 51 76.5
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.6e-14 80.9 60 73.3
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 4.7e-14 80.5 58 70.7
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 8.1e-14 79.7 60 71.7
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 8.1e-14 79.7 56 69.6
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 8.1e-14 79.7 53 69.8
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 1.4e-13 79.0 53 69.8
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.8e-13 78.6 51 74.5
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.8e-13 78.6 58 67.2
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 2.3e-13 78.2 49 77.6
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 2.3e-13 78.2 49 77.6
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 2.3e-13 78.2 49 77.6
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 2.3e-13 78.2 58 70.7
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 3.1e-13 77.8 62 66.1
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.1e-13 77.8 58 67.2
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 3.1e-13 77.8 51 74.5
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 3.1e-13 77.8 58 62.1
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 3.1e-13 77.8 53 73.6
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 6.8e-13 76.6 58 69.0
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 6.8e-13 76.6 60 66.7
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 6.8e-13 76.6 58 67.2
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 8.9e-13 76.3 37 100.0
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 8.9e-13 76.3 57 64.9
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 8.9e-13 76.3 58 70.7
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 8.9e-13 76.3 57 63.2
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 1.2e-12 75.9 52 73.1
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.5e-12 75.5 51 72.5
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 2.0e-12 75.1 51 70.6
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 2.0e-12 75.1 51 70.6
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 2.0e-12 75.1 57 59.6
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 2.0e-12 75.1 59 64.4
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 2.6e-12 74.7 57 68.4
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.4e-12 74.3 55 67.3
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 3.4e-12 74.3 58 65.5
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 4.4e-12 73.9 57 68.4
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 5.8e-12 73.6 55 70.9
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.7e-11 72.0 60 66.7
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 1.7e-11 72.0 52 65.4
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 1.7e-11 72.0 58 63.8
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 1.7e-11 72.0 55 67.3
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 2.2e-11 71.6 47 70.2
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 2.9e-11 71.2 51 64.7
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 2.9e-11 71.2 55 58.2
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 3.7e-11 70.9 56 64.3
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 3.7e-11 70.9 54 63.0
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 4.9e-11 70.5 47 68.1
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 6.4e-11 70.1 51 64.7
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 6.4e-11 70.1 51 64.7
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 6.4e-11 70.1 55 61.8
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 8.3e-11 69.7 60 65.0
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 8.3e-11 69.7 53 67.9
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 1.1e-10 69.3 54 63.0
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 1.1e-10 69.3 53 60.4
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 1.4e-10 68.9 39 84.6
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.1e-10 67.4 60 63.3
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 5.4e-10 67.0 60 63.3
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.1e-10 66.6 51 68.6
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 2.1e-09 65.1 41 73.2
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 3.5e-09 64.3 75 50.7
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 3.5e-09 64.3 61 55.7
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.0e-08 62.8 60 56.7
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 1.1e-07 59.3 87 44.8


User provided reference genes

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