Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 1.1e-19 99.0 50 100.0
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 1.1e-19 99.0 50 100.0
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 2.1e-18 94.7 48 100.0
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 4.6e-18 93.6 53 94.3
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 7.9e-18 92.8 53 92.5
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 3.0e-17 90.9 52 92.3
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 5.1e-17 90.1 53 88.7
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 6.7e-17 89.7 52 90.4
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.1e-16 89.0 53 88.7
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 1.5e-16 88.6 52 88.5
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 1.5e-16 88.6 52 88.5
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.5e-16 88.6 52 88.5
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 1.5e-16 88.6 52 88.5
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 3.3e-16 87.4 45 97.8
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 3.3e-16 87.4 45 97.8
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 3.3e-16 87.4 45 97.8
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 3.3e-16 87.4 53 84.9
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 3.3e-16 87.4 53 84.9
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 1.3e-15 85.5 50 90.0
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 1.7e-15 85.1 53 83.0
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 1.7e-15 85.1 44 90.9
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 2.2e-15 84.7 53 84.9
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 2.8e-15 84.3 45 95.6
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 2.8e-15 84.3 45 95.6
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 2.8e-15 84.3 47 89.4
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 2.8e-15 84.3 52 82.7
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 2.8e-15 84.3 44 90.9
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 3.7e-15 84.0 52 80.8
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 4.8e-15 83.6 52 80.8
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 6.3e-15 83.2 52 80.8
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 6.3e-15 83.2 53 79.2
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 6.3e-15 83.2 45 91.1
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 6.3e-15 83.2 52 80.8
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 8.2e-15 82.8 44 93.2
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 8.2e-15 82.8 52 82.7
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 1.4e-14 82.0 44 90.9
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 1.8e-14 81.6 45 93.3
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 2.4e-14 81.3 44 86.4
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 2.4e-14 81.3 45 88.9
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 2.4e-14 81.3 44 90.9
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 2.4e-14 81.3 45 84.4
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 3.1e-14 80.9 44 88.6
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 3.1e-14 80.9 44 93.2
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 4.1e-14 80.5 52 76.9
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 4.1e-14 80.5 52 76.9
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 4.1e-14 80.5 45 91.1
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 5.3e-14 80.1 45 86.7
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 5.3e-14 80.1 44 86.4
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 5.3e-14 80.1 45 88.9
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 5.3e-14 80.1 52 76.9
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 6.9e-14 79.7 45 86.7
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 6.9e-14 79.7 44 86.4
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 1.2e-13 79.0 44 88.6
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 1.2e-13 79.0 45 84.4
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 2.0e-13 78.2 45 82.2
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 4.5e-13 77.0 45 82.2
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 5.9e-13 76.6 45 86.7
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 5.9e-13 76.6 45 82.2
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 5.9e-13 76.6 54 77.8
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 5.9e-13 76.6 53 79.2
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 7.7e-13 76.3 51 74.5
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 7.7e-13 76.3 44 84.1
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 1.0e-12 75.9 44 79.5
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 1.3e-12 75.5 42 88.1
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 1.3e-12 75.5 54 75.9
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 1.3e-12 75.5 45 84.4
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 1.3e-12 75.5 54 79.6
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 3.8e-12 73.9 51 74.5
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 5.0e-12 73.6 44 79.5
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 5.0e-12 73.6 44 79.5
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 6.5e-12 73.2 48 79.2
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 1.1e-11 72.4 44 79.5
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 1.4e-11 72.0 45 73.3
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 2.5e-11 71.2 45 77.8
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 3.2e-11 70.9 44 79.5
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 5.5e-11 70.1 48 77.1
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.5e-11 70.1 48 72.9
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.5e-11 70.1 48 72.9
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 9.4e-11 69.3 44 72.7
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 1.6e-10 68.6 45 73.3
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 2.7e-10 67.8 44 79.5
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 3.6e-10 67.4 39 82.1
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 6.1e-10 66.6 44 70.5
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 1.8e-09 65.1 39 76.9
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 8.8e-09 62.8 46 63.0
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 5.7e-08 60.1 29 100.0
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 2.8e-07 57.8 29 96.6
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 2.8e-07 57.8 32 87.5
Atru.chr1.372 Acer truncatum HOM05D007712 ORTHO05D009755 5.3e-06 53.5 32 81.2
Atru.chr2.3306 Acer truncatum HOM05D007712 ORTHO05D009755 5.3e-06 53.5 32 81.2


User provided reference genes

Program Settings