Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 4.5e-132 474.6 233 100.0
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 2.0e-111 406.0 221 91.4
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 4.9e-110 401.4 233 87.1
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 6.3e-110 401.0 232 87.1
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-108 396.4 221 90.5
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 4.4e-87 325.1 217 80.6
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 4.3e-74 282.0 226 62.4
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 2.8e-73 279.3 226 62.4
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 8.1e-73 277.7 226 61.9
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 7.6e-71 271.2 228 61.0
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 6.4e-70 268.1 231 60.6
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 7.8e-68 261.2 268 58.6
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 3.9e-67 258.8 266 56.4
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 3.3e-66 255.8 268 57.1
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 9.6e-66 254.2 237 58.2
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 9.6e-66 254.2 237 58.2
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.8e-65 252.7 254 55.5
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 3.6e-65 252.3 262 55.3
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 8.1e-65 251.1 248 57.7
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 4.0e-64 248.8 296 52.0
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 9.9e-63 244.2 262 53.4
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 2.9e-62 242.7 242 58.3
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 2.9e-62 242.7 242 58.3
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 4.9e-62 241.9 253 56.1
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 4.9e-62 241.9 262 53.1
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.2e-61 239.2 263 51.7
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 2.1e-60 236.5 252 52.0
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 8.7e-59 231.1 261 49.4
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.5e-58 229.6 270 49.3
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 7.4e-58 228.0 252 52.0
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-57 227.3 262 51.5
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 1.3e-57 227.3 276 49.6
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.8e-57 226.1 278 48.6
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 2.8e-57 226.1 261 51.0
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 2.8e-57 226.1 251 51.8
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 3.7e-57 225.7 263 49.8
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 4.8e-57 225.3 263 49.8
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 4.8e-57 225.3 263 49.8
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.3e-56 221.9 221 57.5
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 7.6e-55 218.0 223 54.3
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 9.9e-55 217.6 253 50.6
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 4.9e-54 215.3 274 47.4
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.1e-53 214.2 281 47.3
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.2e-52 210.7 225 52.9
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 2.1e-52 209.9 246 50.0
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 6.0e-52 208.4 240 50.4
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 5.1e-51 205.3 234 52.6
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.6e-50 201.8 248 49.6
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 8.2e-49 198.0 260 46.5
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 2.6e-47 193.0 263 42.6
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.6e-47 193.0 256 47.7
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-46 189.9 262 43.1
BraA03t14092Z Brassica rapa HOM05D007337 ORTHO05D004972 2.2e-46 189.9 106 94.3
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 6.5e-46 188.3 277 41.5
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.7e-44 183.0 285 41.4
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.0e-43 181.0 233 48.9
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 1.0e-43 181.0 236 44.9
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.3e-43 180.6 287 40.1
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 1.8e-43 180.3 166 60.2
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 2.3e-43 179.9 283 41.7
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.4e-40 170.6 283 39.6
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 1.4e-40 170.6 239 44.8
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 4.1e-40 169.1 252 41.7
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 9.0e-40 167.9 252 41.7
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.5e-39 167.2 238 44.1
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 1.0e-38 164.5 276 38.4
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 5.0e-38 162.2 182 50.5
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 6.5e-38 161.8 263 38.0
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.5e-37 158.7 288 36.8
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 7.2e-37 158.3 257 38.5
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.7e-36 156.4 292 36.6
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 6.3e-33 145.2 242 40.1
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 5.9e-31 138.7 244 39.3
CARHR215530 Cardamine hirsuta HOM05D007337 ORTHO05D004972 8.5e-30 134.8 87 75.9
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-29 134.4 238 39.5
Carub.0007s2492 Capsella rubella HOM05D007337 ORTHO05D004972 5.5e-29 132.1 88 72.7
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 7.2e-29 131.7 148 52.0
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 1.4e-27 127.5 243 39.9
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.8e-27 127.1 116 55.2
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 3.9e-27 125.9 237 39.7
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 6.7e-27 125.2 245 38.4
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 3.7e-25 119.4 240 37.1
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 4.8e-25 119.0 235 36.2
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 4.8e-25 119.0 240 37.1
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 8.2e-25 118.2 210 41.0
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-23 114.4 128 46.1
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 2.0e-23 113.6 113 51.3
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.7e-22 110.5 133 43.6
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 5.0e-22 109.0 272 34.6
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 1.4e-21 107.5 229 33.6
BcaNung00180 Brassica carinata HOM05D007337 ORTHO05D004972 3.2e-21 106.3 59 86.4
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.6e-20 102.8 228 32.0
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 8.0e-20 101.7 247 30.0
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.3e-19 100.1 233 31.3
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 3.0e-19 99.8 246 29.7
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 8.8e-19 98.2 228 31.1
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 1.1e-18 97.8 235 33.2
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 3.3e-18 96.3 268 27.6
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 7.4e-18 95.1 230 28.7
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 7.4e-18 95.1 237 30.0
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 1.3e-17 94.4 245 30.6
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 1.3e-17 94.4 245 30.6
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.8e-17 93.2 157 38.9
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 2.8e-17 93.2 238 30.7
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 3.7e-17 92.8 245 27.3
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 4.8e-17 92.4 243 30.0
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 8.2e-17 91.7 229 30.1
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.4e-16 90.1 242 26.9
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-15 87.8 252 28.2
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-15 87.8 252 28.2
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 1.2e-15 87.8 252 28.2
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 2.0e-15 87.0 109 44.0
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 4.5e-15 85.9 225 29.8
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 4.5e-15 85.9 247 27.5
BolC7t45322H Brassica oleracea HOM05D007337 ORTHO05D004972 4.5e-15 85.9 86 52.3
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 4.5e-15 85.9 247 27.5
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 1.0e-14 84.7 194 27.8
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 1.3e-14 84.3 252 25.8
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-14 84.0 252 27.4
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-14 84.0 248 26.6
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 1.7e-14 84.0 249 25.7
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 2.9e-14 83.2 248 26.6
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 3.8e-14 82.8 244 26.6
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 6.5e-14 82.0 250 26.8
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 6.5e-14 82.0 220 30.5
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 8.5e-14 81.6 257 28.8
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-13 81.3 247 30.0
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-13 81.3 247 30.0
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-13 81.3 247 30.0
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 1.5e-13 80.9 230 30.9
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 5.5e-13 79.0 260 24.6
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 7.2e-13 78.6 250 26.0
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 1.2e-12 77.8 199 30.2
BcaNung02867 Brassica carinata HOM05D007337 ORTHO05D004972 1.6e-12 77.4 62 59.7
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 2.1e-12 77.0 217 27.6
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 2.7e-12 76.6 260 24.2
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 3.6e-12 76.3 209 28.7
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.7e-12 75.9 223 25.1
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 6.1e-12 75.5 188 28.2
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 6.1e-12 75.5 86 50.0
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 1.0e-11 74.7 210 29.0
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 3.0e-11 73.2 219 26.5
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 8.8e-11 71.6 219 25.6
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-10 71.2 221 25.3
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 4.4e-10 69.3 237 28.7
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 4.4e-10 69.3 232 25.0
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 1.7e-09 67.4 110 33.6
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 2.8e-09 66.6 180 28.3
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.1e-08 64.7 232 26.3
BcaNung02863 Brassica carinata HOM05D007337 ORTHO05D092262 9.1e-08 61.6 42 76.2
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 9.1e-08 61.6 85 41.2
PGSC0003DMG400004807 Solanum tuberosum HOM05D001099 ORTHO05D010560 1.2e-07 61.2 101 34.7
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 3.5e-07 59.7 85 38.8
CAN.G1218.24 Capsicum annuum HOM05D001099 ORTHO05D000958 5.9e-07 58.9 85 35.3
Dinv39136 Davidia involucrata HOM05D001099 ORTHO05D000958 3.8e-06 56.2 84 38.1
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 5.0e-06 55.8 204 25.5
Dinv39137 Davidia involucrata HOM05D001099 ORTHO05D010560 6.5e-06 55.5 87 37.9


User provided reference genes

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