Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 2.3e-125 452.2 223 100.0
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 3.0e-125 451.8 222 100.0
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-113 412.9 221 93.7
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-110 402.1 233 87.1
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 7.9e-110 400.6 221 91.9
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 4.2e-95 351.7 217 85.3
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 6.1e-70 268.1 223 61.0
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 4.0e-69 265.4 223 61.0
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 1.2e-68 263.8 225 60.4
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-68 263.8 223 60.5
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 4.4e-68 261.9 225 60.4
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 9.2e-66 254.2 227 59.5
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 9.2e-66 254.2 227 59.5
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 1.2e-65 253.8 266 54.9
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 1.2e-65 253.8 268 56.0
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 2.3e-64 249.6 268 55.6
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 5.0e-64 248.4 262 54.2
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 1.9e-63 246.5 248 56.0
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 5.6e-63 245.0 254 54.7
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.2e-62 243.8 262 52.3
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 6.2e-62 241.5 296 50.7
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 1.5e-60 236.9 242 55.8
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 1.5e-60 236.9 242 55.8
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 7.5e-60 234.6 261 51.0
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 7.5e-60 234.6 262 51.9
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-59 233.0 253 54.5
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.4e-58 230.3 278 49.3
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 3.2e-58 229.2 252 50.4
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-56 223.8 257 48.2
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.3e-56 223.8 215 57.7
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.3e-56 223.8 213 56.8
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 3.0e-56 222.6 261 48.7
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.0e-56 221.9 270 46.7
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 6.6e-56 221.5 262 49.2
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 1.5e-55 220.3 251 49.4
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 1.9e-55 219.9 261 48.3
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 4.3e-55 218.8 274 47.8
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 4.3e-55 218.8 274 47.4
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 1.2e-54 217.2 264 48.9
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 1.2e-54 217.2 264 48.9
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 1.6e-54 216.9 263 48.3
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.6e-54 215.7 213 54.0
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 3.1e-53 212.6 246 51.6
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 1.2e-52 210.7 253 48.6
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 9.8e-52 207.6 228 54.4
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.7e-51 206.8 239 49.8
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 3.7e-51 205.7 281 45.9
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.5e-49 199.1 245 51.0
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 5.1e-48 195.3 260 47.7
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.6e-46 190.3 251 47.4
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 8.9e-45 184.5 263 41.4
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 2.9e-43 179.5 280 38.6
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.8e-43 179.1 228 50.0
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 3.8e-43 179.1 261 41.4
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 6.4e-43 178.3 233 45.1
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 1.1e-42 177.6 283 39.9
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 4.1e-42 175.6 156 61.5
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 7.8e-41 171.4 289 38.4
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 7.8e-41 171.4 287 37.6
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 8.6e-40 167.9 239 46.0
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 8.6e-40 167.9 232 44.0
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 1.1e-39 167.5 252 41.3
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 2.5e-39 166.4 252 41.3
BraA03t14092Z Brassica rapa HOM05D007337 ORTHO05D004972 2.5e-39 166.4 95 92.6
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.6e-38 162.5 283 37.5
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-37 161.0 182 51.6
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 2.0e-36 156.8 276 37.7
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 2.9e-35 152.9 262 37.4
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.8e-35 152.5 288 35.4
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.8e-35 152.5 257 37.4
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 7.1e-34 148.3 292 34.9
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.1e-29 132.9 134 53.0
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 6.9e-29 131.7 231 38.5
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.6e-28 129.8 116 56.0
Carub.0007s2492 Capsella rubella HOM05D007337 ORTHO05D004972 5.8e-28 128.6 97 67.0
CARHR215530 Cardamine hirsuta HOM05D007337 ORTHO05D004972 7.6e-28 128.3 87 73.6
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 1.7e-27 127.1 240 36.7
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 1.9e-26 123.6 245 37.6
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 4.2e-26 122.5 234 36.8
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 2.7e-25 119.8 243 37.0
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 3.5e-25 119.4 121 49.6
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 6.0e-25 118.6 236 36.9
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 3.0e-24 116.3 109 51.4
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 3.9e-24 115.9 204 40.2
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.1e-23 114.4 118 50.0
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 2.5e-23 113.2 234 34.6
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 6.2e-22 108.6 239 36.0
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 1.1e-21 107.8 239 36.0
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-19 100.9 272 32.4
BcaNung00180 Brassica carinata HOM05D007337 ORTHO05D004972 1.7e-19 100.5 59 83.1
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.2e-19 100.1 152 42.1
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.2e-19 100.1 240 31.7
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 3.2e-18 96.3 237 32.9
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 9.3e-18 94.7 243 27.6
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-17 94.0 205 34.6
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.6e-17 92.4 226 30.1
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 6.0e-17 92.0 227 31.7
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 6.0e-17 92.0 225 31.6
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 7.9e-17 91.7 109 46.8
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 1.8e-16 90.5 226 27.4
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 6.7e-16 88.6 243 27.2
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.1e-15 87.8 235 28.5
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 1.1e-15 87.8 268 25.7
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 1.1e-15 87.8 237 29.1
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-15 87.4 244 27.0
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 1.9e-15 87.0 243 29.6
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 3.3e-15 86.3 248 27.4
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 3.3e-15 86.3 245 26.1
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 4.3e-15 85.9 252 26.6
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 5.6e-15 85.5 248 27.4
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 5.6e-15 85.5 243 29.6
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 5.6e-15 85.5 242 29.3
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 5.6e-15 85.5 241 26.1
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 7.4e-15 85.1 244 27.0
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 7.4e-15 85.1 242 26.9
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 9.6e-15 84.7 224 30.8
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 9.6e-15 84.7 193 29.0
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 1.3e-14 84.3 249 28.5
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.3e-14 84.3 249 28.5
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 1.3e-14 84.3 249 28.5
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 1.6e-14 84.0 227 29.1
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 1.6e-14 84.0 222 30.6
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.1e-14 83.6 86 54.7
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 2.8e-14 83.2 250 27.2
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 3.7e-14 82.8 252 26.6
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 1.1e-13 81.3 220 30.0
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 1.1e-13 81.3 198 29.3
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 2.4e-13 80.1 257 28.4
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 2.4e-13 80.1 245 26.1
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 2.4e-13 80.1 245 26.1
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 3.1e-13 79.7 228 30.3
BolC7t45322H Brassica oleracea HOM05D007337 ORTHO05D004972 3.1e-13 79.7 86 50.0
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 4.0e-13 79.3 217 28.1
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 5.3e-13 79.0 206 29.1
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 6.9e-13 78.6 250 26.0
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-12 77.8 240 28.8
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-12 77.8 240 28.8
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-12 77.8 240 28.8
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-12 77.4 185 28.6
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 2.0e-12 77.0 260 24.6
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 2.0e-12 77.0 201 30.3
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 2.6e-12 76.6 203 30.0
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 2.6e-12 76.6 203 26.1
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 5.8e-12 75.5 110 37.3
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 7.6e-12 75.1 215 28.8
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 1.0e-11 74.7 260 24.2
BcaNung02863 Brassica carinata HOM05D007337 ORTHO05D092262 1.0e-11 74.7 42 88.1
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.3e-11 74.3 270 23.7
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.3e-11 74.3 219 26.9
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 4.9e-11 72.4 112 33.9
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 6.5e-11 72.0 182 27.5
BcaNung02867 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-10 71.2 62 56.5
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.4e-10 70.9 205 25.4
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 1.9e-10 70.5 233 26.6
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 2.7e-09 66.6 219 24.2
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 3.5e-09 66.2 212 26.9
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 9.6e-07 58.2 90 38.9
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 4.8e-06 55.8 85 37.6
CAN.G1218.24 Capsicum annuum HOM05D001099 ORTHO05D000958 8.2e-06 55.1 85 34.1


User provided reference genes

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