Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 7.2e-56 220.3 109 100.0
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 1.8e-51 205.7 110 96.4
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 1.8e-51 205.7 110 96.4
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 1.8e-51 205.7 110 96.4
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 3.1e-51 204.9 109 95.4
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 9.1e-51 203.4 110 95.5
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 3.4e-50 201.4 105 96.2
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 3.4e-50 201.4 105 96.2
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 5.9e-50 200.7 109 91.7
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 7.7e-50 200.3 101 97.0
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 1.3e-49 199.5 105 95.2
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 1.3e-49 199.5 105 95.2
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 2.2e-49 198.7 101 95.0
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 2.5e-48 195.3 105 92.4
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 2.5e-48 195.3 105 92.4
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 7.2e-48 193.7 105 91.4
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 7.2e-48 193.7 100 93.0
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 2.1e-47 192.2 105 91.4
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 8.0e-47 190.3 101 91.1
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 3.9e-46 188.0 102 90.2
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 6.7e-46 187.2 101 90.1
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 8.8e-46 186.8 101 87.1
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 8.8e-46 186.8 101 87.1
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 8.8e-46 186.8 101 88.1
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 8.8e-46 186.8 101 87.1
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 1.1e-45 186.4 101 89.1
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.1e-45 186.4 101 87.1
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 1.5e-45 186.0 101 87.1
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 2.0e-45 185.7 101 87.1
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 2.0e-45 185.7 101 88.1
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 3.3e-45 184.9 101 90.1
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 3.3e-45 184.9 101 86.1
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 4.4e-45 184.5 100 89.0
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 5.7e-45 184.1 100 89.0
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 7.4e-45 183.7 100 88.0
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 7.4e-45 183.7 100 87.0
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 9.7e-45 183.3 100 89.0
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 9.7e-45 183.3 100 87.0
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 9.7e-45 183.3 100 88.0
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 1.3e-44 183.0 101 87.1
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 1.3e-44 183.0 101 86.1
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.7e-44 182.6 101 88.1
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 1.7e-44 182.6 100 87.0
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 2.2e-44 182.2 104 84.6
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 2.8e-44 181.8 101 85.1
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 2.8e-44 181.8 101 85.1
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 3.7e-44 181.4 102 83.3
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 3.7e-44 181.4 100 85.0
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 3.7e-44 181.4 101 86.1
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 4.8e-44 181.0 100 84.0
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 6.3e-44 180.6 100 86.0
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 8.2e-44 180.3 100 85.0
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 8.2e-44 180.3 100 85.0
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 8.2e-44 180.3 101 86.1
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 1.1e-43 179.9 101 85.1
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 85.0
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 1.1e-43 179.9 101 82.2
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 85.0
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 85.0
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 84.0
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 1.4e-43 179.5 101 82.2
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 84.0
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 1.8e-43 179.1 95 88.4
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.8e-43 179.1 101 87.1
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 1.8e-43 179.1 100 85.0
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 2.4e-43 178.7 95 89.5
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 2.4e-43 178.7 99 86.9
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 2.4e-43 178.7 96 87.5
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 2.4e-43 178.7 96 88.5
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 3.1e-43 178.3 100 85.0
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 4.1e-43 177.9 101 83.2
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 5.3e-43 177.6 100 84.0
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 5.3e-43 177.6 100 83.0
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 5.3e-43 177.6 100 84.0
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 7.0e-43 177.2 94 90.4
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 7.0e-43 177.2 94 90.4
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 7.0e-43 177.2 100 84.0
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 9.1e-43 176.8 100 83.0
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 9.1e-43 176.8 100 84.0
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 1.2e-42 176.4 100 83.0
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 1.2e-42 176.4 100 83.0
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.2e-42 176.4 101 81.2
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 1.2e-42 176.4 100 83.0
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 1.2e-42 176.4 100 84.0
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.6e-42 176.0 100 82.0
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 2.0e-42 175.6 100 82.0
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 2.0e-42 175.6 100 83.0
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 3.5e-42 174.9 100 81.0
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 4.5e-42 174.5 100 83.0
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 4.5e-42 174.5 101 83.2
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 4.5e-42 174.5 100 82.0
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 5.9e-42 174.1 100 82.0
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 5.9e-42 174.1 100 82.0
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 5.9e-42 174.1 100 82.0
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 5.9e-42 174.1 99 83.8
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 7.7e-42 173.7 94 86.2
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 7.7e-42 173.7 99 81.8
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 1.0e-41 173.3 100 82.0
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 1.3e-41 172.9 125 71.2
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 1.3e-41 172.9 95 86.3
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 1.3e-41 172.9 100 80.0
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 1.7e-41 172.6 96 85.4
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 1.7e-41 172.6 100 81.0
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 1.7e-41 172.6 95 84.2
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 2.9e-41 171.8 100 81.0
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 8.5e-41 170.2 94 85.1
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.1e-40 169.9 101 81.2
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 1.9e-40 169.1 94 83.0
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 3.2e-40 168.3 100 80.0
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 1.2e-39 166.4 94 83.0
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 1.6e-34 149.4 96 76.0
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 7.2e-32 140.6 101 71.3
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 1.4e-30 136.3 100 70.0
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 5.7e-29 131.0 79 77.2
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 3.8e-25 118.2 93 58.1
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 9.5e-24 113.6 93 58.1
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 1.4e-22 109.8 91 56.0
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 3.0e-22 108.6 93 52.7
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 8.9e-22 107.1 92 54.3
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 7.5e-21 104.0 94 52.1
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 2.2e-20 102.4 91 57.1
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 2.0e-18 95.9 59 74.6
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 3.5e-18 95.1 60 75.0
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 2.9e-17 92.0 51 82.4
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 8.6e-17 90.5 52 78.8
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 3.3e-16 88.6 89 49.4
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 1.0e-14 83.6 48 81.2
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 3.0e-14 82.0 51 70.6
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 4.4e-13 78.2 52 69.2
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 5.8e-13 77.8 94 47.9
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 7.5e-13 77.4 55 67.3
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 1.7e-09 66.2 43 72.1


User provided reference genes

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