Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 1.5e-37 159.1 83 100.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 2.3e-30 135.2 118 67.8
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 1.6e-26 122.5 82 80.5
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.7e-25 119.0 84 81.0
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.7e-25 119.0 84 81.0
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.1e-24 116.3 89 74.2
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 1.9e-24 115.5 83 77.1
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 3.2e-24 114.8 84 76.2
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 5.5e-24 114.0 89 74.2
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 9.4e-24 113.2 87 73.6
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 1.2e-23 112.8 82 80.5
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.0e-22 109.8 88 73.9
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 4.4e-21 104.4 100 65.0
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 3.7e-20 101.3 82 72.0
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 3.7e-20 101.3 101 62.4
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.1e-19 99.8 84 73.8
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 2.7e-18 95.1 84 66.7
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 1.7e-17 92.4 82 65.9
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 6.5e-17 90.5 81 64.2
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 4.2e-16 87.8 95 58.9
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 5.5e-16 87.4 123 48.0
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 1.2e-15 86.3 75 66.7
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.6e-15 85.9 79 63.3
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 2.7e-15 85.1 75 64.0
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 3.6e-15 84.7 78 65.4
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 4.7e-15 84.3 83 62.7
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.1e-15 84.0 75 62.7
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.1e-15 84.0 75 62.7
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 8.0e-15 83.6 81 63.0
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.0e-14 83.2 81 58.0
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.4e-14 82.8 84 56.0
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.4e-14 82.8 81 59.3
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 3.0e-14 81.6 73 63.0
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.0e-14 81.6 72 62.5
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 4.0e-14 81.3 83 59.0
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 6.8e-14 80.5 101 53.5
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 6.8e-14 80.5 83 56.6
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 6.8e-14 80.5 78 59.0
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 6.8e-14 80.5 97 53.6
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 6.8e-14 80.5 84 60.7
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 6.8e-14 80.5 84 58.3
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 1.2e-13 79.7 74 60.8
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 1.2e-13 79.7 96 57.3
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 1.2e-13 79.7 74 60.8
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.0e-13 79.0 72 61.1
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 2.0e-13 79.0 80 56.2
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 5.7e-13 77.4 83 57.8
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 5.7e-13 77.4 82 61.0
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 5.7e-13 77.4 83 57.8
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 7.5e-13 77.0 98 54.1
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 7.5e-13 77.0 84 57.1
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 9.8e-13 76.6 95 51.6
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 9.8e-13 76.6 83 56.6
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 9.8e-13 76.6 108 46.3
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 9.8e-13 76.6 85 56.5
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 9.8e-13 76.6 88 55.7
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 9.8e-13 76.6 88 55.7
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.7e-12 75.9 77 57.1
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 1.7e-12 75.9 80 60.0
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 2.2e-12 75.5 108 47.2
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.8e-12 75.1 77 55.8
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 4.8e-12 74.3 82 54.9
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.8e-12 74.3 87 52.9
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 4.8e-12 74.3 96 52.1
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 6.3e-12 73.9 93 52.7
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 6.3e-12 73.9 82 53.7
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.1e-11 73.2 99 50.5
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.4e-11 72.0 109 47.7
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 3.1e-11 71.6 81 55.6
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 3.1e-11 71.6 98 52.0
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.1e-11 71.2 80 53.8
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.6e-10 69.3 86 48.8
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.6e-10 69.3 129 40.3
Thhalv10027508m.g Eutrema salsugineum HOM05D003821 ORTHO05D004449 2.7e-10 68.6 38 94.7
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 2.7e-10 68.6 113 45.1
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 5.9e-10 67.4 87 47.1
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.0e-09 66.6 69 58.0
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.3e-09 66.2 85 50.6
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.3e-09 66.2 106 44.3
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 1.7e-09 65.9 80 52.5
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.2e-09 65.5 119 39.5
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.2e-09 65.5 70 55.7
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 6.5e-09 63.9 94 45.7
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 6.5e-09 63.9 89 46.1
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 8.5e-09 63.5 111 42.3
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 1.5e-08 62.8 83 49.4
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 1.9e-08 62.4 115 39.1
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.9e-08 62.4 102 42.2
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 1.9e-08 62.4 81 53.1
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.5e-08 62.0 86 48.8
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.5e-08 62.0 76 51.3
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 4.2e-08 61.2 90 48.9
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 4.2e-08 61.2 75 49.3
AL6G39190 Arabidopsis lyrata HOM05D006749 ORTHO05D008352 2.1e-07 58.9 35 82.9
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 2.7e-07 58.5 130 34.6
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 3.6e-07 58.2 81 48.1
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 3.6e-07 58.2 82 46.3
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 6.1e-07 57.4 146 35.6
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 8.0e-07 57.0 75 52.0
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.0e-06 56.6 27 100.0
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 1.0e-06 56.6 127 39.4
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 1.0e-06 56.6 30 90.0
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.0e-06 56.6 27 100.0
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 1.4e-06 56.2 81 46.9
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.4e-06 56.2 75 48.0
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 1.4e-06 56.2 78 44.9
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.4e-06 56.2 82 47.6
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 3.0e-06 55.1 83 44.6
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 3.0e-06 55.1 82 45.1
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.8e-06 53.9 84 45.2
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 6.8e-06 53.9 75 46.7
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 8.8e-06 53.5 123 33.3
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 8.8e-06 53.5 83 42.2
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 8.8e-06 53.5 83 44.6


User provided reference genes

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