Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 0.0e+00 1580.1 799 100.0
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 0.0e+00 1566.2 824 97.0
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 0.0e+00 1566.2 824 97.0
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 0.0e+00 1499.6 835 93.1
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 0.0e+00 1496.9 835 92.7
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 0.0e+00 1477.6 833 91.0
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 0.0e+00 1389.0 801 87.0
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 0.0e+00 1363.2 838 84.6
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 0.0e+00 1356.3 838 84.0
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 0.0e+00 1351.3 837 83.6
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 0.0e+00 1307.7 840 81.4
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 0.0e+00 1299.6 844 79.3
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1150.6 872 71.3
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 9.3e-286 986.9 815 63.2
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 1.9e-283 979.2 854 61.1
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 3.3e-283 978.4 850 61.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 3.3e-283 978.4 852 60.8
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 1.3e-282 976.5 857 60.9
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 4.0e-281 971.5 857 60.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 2.2e-279 965.7 852 61.0
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 3.8e-279 964.9 854 60.3
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 3.8e-279 964.9 857 60.9
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 8.4e-279 963.8 854 60.0
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 1.4e-278 963.0 851 59.6
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 3.5e-277 958.4 854 60.3
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 3.0e-276 955.3 863 60.1
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 1.5e-275 953.0 856 59.7
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 3.3e-275 951.8 853 58.9
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 9.6e-275 950.3 853 59.4
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 6.2e-274 947.6 856 59.2
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 1.1e-273 946.8 857 59.7
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.1e-273 945.3 856 59.1
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 1.2e-272 943.3 857 59.4
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 2.0e-272 942.6 856 59.1
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 4.5e-272 941.4 859 58.9
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 9.3e-270 933.7 853 59.1
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 9.3e-270 933.7 853 58.6
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.6e-269 932.9 824 60.6
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 7.9e-269 930.6 820 59.9
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 1.0e-268 930.2 904 56.0
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 2.3e-268 929.1 824 59.6
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 6.7e-268 927.5 856 58.5
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.1e-267 926.8 820 59.8
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 1.9e-267 926.0 855 57.5
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 1.9e-267 926.0 790 61.8
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 2.8e-266 922.2 831 58.5
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.1e-265 918.7 894 55.4
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 5.3e-265 917.9 845 58.2
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 1.2e-264 916.8 782 62.8
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 4.5e-264 914.8 852 57.3
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 2.2e-263 912.5 834 58.3
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 3.8e-263 911.8 845 58.0
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 5.0e-263 911.4 852 57.3
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 8.4e-263 910.6 849 57.5
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 1.1e-262 910.2 849 57.4
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 1.4e-262 909.8 829 58.6
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 1.9e-262 909.4 844 58.3
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 1.0e-260 903.7 850 57.8
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 2.5e-259 899.0 816 58.5
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 1.3e-258 896.7 832 57.3
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 1.8e-257 892.9 868 56.8
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 2.4e-257 892.5 868 56.8
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 3.1e-257 892.1 846 56.9
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 9.0e-257 890.6 849 57.1
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.5e-256 889.8 850 57.3
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 2.6e-256 889.0 846 57.9
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 2.6e-256 889.0 840 56.9
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 5.9e-256 887.9 807 58.0
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 1.7e-255 886.3 845 57.5
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 5.0e-255 884.8 880 55.7
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 2.5e-254 882.5 858 55.8
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 5.5e-254 881.3 853 56.7
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 1.0e-252 877.1 1007 49.9
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.8e-252 876.3 850 56.5
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 1.8e-252 876.3 840 56.7
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 2.5e-251 872.5 809 58.2
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 3.3e-251 872.1 795 59.4
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 2.9e-247 859.0 910 53.0
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.9e-246 856.3 853 55.1
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 1.6e-245 853.2 814 55.8
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 8.8e-244 847.4 847 54.7
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 1.4e-241 840.1 811 57.1
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.6e-240 836.6 861 53.1
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 4.5e-240 835.1 824 56.6
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.2e-239 832.8 926 51.1
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.9e-238 829.7 786 57.0
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 7.5e-235 817.8 782 56.6
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 2.2e-234 816.2 772 58.4
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 4.1e-233 812.0 808 54.3
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.0e-227 793.1 838 53.9
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 5.4e-225 785.0 827 52.7
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.6e-221 773.5 833 53.1
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 3.0e-212 742.7 707 56.9
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 5.7e-211 738.4 726 55.9
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 4.4e-187 659.1 717 52.9
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.3e-177 624.8 882 43.8
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 8.7e-175 618.2 910 42.7
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 7.1e-169 598.6 694 50.7
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 3.5e-160 569.7 787 45.7
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.6e-157 560.8 490 60.4
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 5.5e-153 545.8 841 42.0
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 6.3e-141 505.8 400 64.2
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 2.3e-135 487.3 398 61.8
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.5e-129 467.2 371 64.7
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 3.0e-119 433.7 473 51.0
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.1e-113 415.2 312 68.3
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.2e-107 395.2 359 59.6
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.9e-107 392.9 311 64.3
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.8e-87 328.2 308 56.5
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 7.5e-86 322.8 431 46.9
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 3.2e-84 317.4 778 31.5
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.6e-75 287.0 175 75.4
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.6e-74 283.1 242 59.5
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.1e-71 274.2 150 84.0
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.4e-68 263.5 543 37.2
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.4e-68 263.5 543 37.2
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.6e-67 260.4 382 42.7
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 3.1e-63 247.7 292 47.3
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.5e-62 245.4 137 82.5
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.3e-58 232.3 145 75.9
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.9e-58 230.7 255 54.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.0e-55 220.7 137 73.0
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-54 218.8 409 32.3
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.8e-48 198.0 117 74.4
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 4.0e-47 194.1 398 30.2
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 2.2e-37 161.8 161 51.6
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 8.7e-34 149.8 129 58.9
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 1.3e-29 136.0 264 33.7
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 2.0e-22 112.1 129 47.3
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.0e-21 109.8 61 82.0
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 3.2e-20 104.8 58 82.8
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.6e-19 102.4 170 41.8
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.3e-18 98.6 145 42.1
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.8e-15 89.0 213 27.2
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 1.9e-12 79.0 60 61.7
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.2e-11 76.3 57 63.2
BraA04t17647Z Brassica rapa HOM05D005283 ORTHO05D006769 1.8e-10 72.4 43 74.4
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 5.2e-10 70.9 33 87.9
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 5.3e-07 60.8 37 75.7
Cre13.g580450 Chlamydomonas reinhardtii HOM05D005283 ORTHO05D006769 1.2e-06 59.7 197 26.4
C05p44590 Brassica napus HOM05D005283 ORTHO05D021637 3.5e-06 58.2 37 73.0


User provided reference genes

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