Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-188 662.9 337 100.0
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 1.3e-188 662.9 337 100.0
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 1.1e-187 659.8 337 99.4
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 3.2e-187 658.3 337 99.1
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 3.5e-186 654.8 337 98.8
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 3.1e-182 641.7 323 100.0
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-180 636.3 335 95.2
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 5.4e-179 630.9 335 94.3
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 7.1e-179 630.6 337 93.8
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 1.2e-178 629.8 335 94.3
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 1.2e-178 629.8 335 94.3
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 1.6e-178 629.4 337 93.5
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 4.6e-178 627.9 337 92.9
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 4.6e-178 627.9 335 94.0
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 4.6e-178 627.9 335 94.0
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 6.0e-178 627.5 335 92.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 1.9e-176 622.5 337 92.6
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 2.5e-176 622.1 337 92.3
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 1.7e-172 609.4 341 90.9
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 1.1e-166 590.1 337 87.2
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 5.8e-165 584.3 338 86.1
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 1.0e-164 583.6 338 85.8
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 1.0e-164 583.6 338 84.6
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 2.9e-164 582.0 338 84.9
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 3.8e-164 581.6 338 85.2
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 3.8e-164 581.6 338 85.5
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 3.8e-164 581.6 338 85.5
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 3.8e-164 581.6 338 84.6
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 6.5e-164 580.9 338 85.2
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 8.4e-164 580.5 338 84.9
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 8.4e-164 580.5 336 85.7
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 4.2e-163 578.2 338 84.6
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 1.2e-162 576.6 335 85.1
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 1.2e-162 576.6 335 85.1
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 1.2e-162 576.6 338 85.2
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 1.6e-162 576.2 338 84.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.6e-162 576.2 338 84.0
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 2.1e-162 575.9 338 84.0
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 2.1e-162 575.9 338 84.0
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 2.1e-162 575.9 338 84.3
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 2.1e-162 575.9 338 84.3
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 2.1e-162 575.9 335 83.9
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 2.7e-162 575.5 335 83.9
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 2.7e-162 575.5 338 84.3
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 3.5e-162 575.1 335 84.5
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 3.5e-162 575.1 338 83.7
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 3.5e-162 575.1 338 84.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 4.6e-162 574.7 338 84.0
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 6.1e-162 574.3 338 84.9
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 6.1e-162 574.3 338 83.4
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 7.9e-162 573.9 338 84.0
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 7.9e-162 573.9 338 84.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 1.0e-161 573.5 338 83.4
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 1.3e-161 573.2 338 84.0
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 1.8e-161 572.8 335 84.2
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 1.8e-161 572.8 338 84.3
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 1.8e-161 572.8 338 83.7
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 5.1e-161 571.2 338 83.4
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 6.7e-161 570.9 338 83.1
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 8.7e-161 570.5 338 83.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.5e-160 569.7 335 82.7
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 1.5e-160 569.7 335 83.6
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 1.5e-160 569.7 335 83.6
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 1.5e-160 569.7 335 83.6
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 1.5e-160 569.7 338 82.0
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 1.9e-160 569.3 338 83.4
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 1.9e-160 569.3 338 82.8
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 3.3e-160 568.5 338 83.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 4.3e-160 568.2 335 83.6
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 4.3e-160 568.2 335 83.6
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 5.7e-160 567.8 335 83.6
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 7.4e-160 567.4 338 84.0
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 9.7e-160 567.0 338 83.4
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 9.7e-160 567.0 338 82.8
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 1.3e-159 566.6 338 82.8
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 3.7e-159 565.1 336 83.0
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 4.8e-159 564.7 335 82.7
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 8.2e-159 563.9 338 81.7
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 8.2e-159 563.9 367 78.7
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 1.4e-158 563.1 341 82.1
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 1.4e-158 563.1 338 84.0
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 1.4e-158 563.1 347 81.0
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 3.1e-158 562.0 338 82.0
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 6.9e-158 560.8 338 83.7
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 1.5e-157 559.7 338 80.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 1.5e-157 559.7 347 80.4
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 2.0e-157 559.3 335 82.1
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 5.9e-157 557.8 335 83.0
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 7.7e-157 557.4 335 83.6
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 1.3e-156 556.6 338 80.2
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 1.7e-156 556.2 350 79.7
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 6.5e-156 554.3 338 80.8
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 8.5e-156 553.9 336 82.7
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 8.5e-156 553.9 336 80.7
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 8.5e-156 553.9 338 79.9
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 8.5e-156 553.9 338 81.1
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.9e-155 552.7 336 81.8
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 2.5e-155 552.4 335 82.7
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 3.2e-155 552.0 335 82.4
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 3.2e-155 552.0 338 81.7
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 5.5e-155 551.2 338 80.2
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 1.6e-154 549.7 334 81.4
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 3.6e-154 548.5 339 81.4
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 4.6e-154 548.1 335 80.6
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.0e-153 547.0 334 80.2
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 1.4e-153 546.6 338 81.4
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 5.1e-153 544.7 335 80.0
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 8.8e-153 543.9 335 80.9
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 3.3e-152 542.0 338 79.6
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 5.7e-152 541.2 334 78.4
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 5.7e-152 541.2 338 79.9
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 2.8e-151 538.9 327 81.3
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.8e-151 538.1 353 76.8
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 8.2e-151 537.3 334 78.4
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 4.1e-150 535.0 335 77.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 2.6e-149 532.3 352 76.4
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 2.6e-149 532.3 335 77.3
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 2.9e-148 528.9 349 76.2
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.0e-148 528.1 392 70.9
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.2e-147 525.0 335 77.9
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 6.1e-146 521.2 309 82.5
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 9.7e-144 513.8 340 77.9
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 9.7e-144 513.8 327 78.9
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 1.4e-142 510.0 451 61.4
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 2.2e-140 502.7 317 77.3
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 2.5e-139 499.2 338 76.0
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 4.2e-139 498.4 297 82.5
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 4.8e-135 485.0 293 79.9
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 7.7e-133 477.6 334 70.4
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 3.6e-130 468.8 334 73.1
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.2e-128 463.8 337 71.2
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 5.7e-128 461.5 323 74.6
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 2.7e-125 452.6 268 83.2
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.7e-124 449.9 335 66.9
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 3.0e-121 439.1 267 79.4
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-120 437.2 335 67.5
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.7e-111 406.8 339 61.4
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.9e-95 352.8 362 52.8
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.7e-92 343.6 247 70.9
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 8.9e-89 331.3 343 57.4
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 3.6e-82 309.3 292 57.9
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 9.9e-80 301.2 263 61.2
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-79 299.7 262 63.4
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 4.9e-79 298.9 180 82.8
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 7.8e-77 291.6 337 49.9
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.1e-70 268.5 160 81.2
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 8.4e-63 245.0 227 60.4
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-58 230.7 216 57.9
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 6.3e-50 202.2 151 65.6
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-25 120.6 91 64.8
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 4.7e-21 106.3 95 60.0
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-18 98.2 84 60.7
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 2.8e-18 97.1 322 28.0
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 1.6e-16 91.3 60 66.7
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 8.8e-12 75.5 49 73.5
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.2e-11 75.1 57 70.2
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 1.5e-11 74.7 46 76.1
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.4e-09 68.2 48 68.8
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-07 60.8 43 67.4
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 5.0e-07 59.7 37 70.3


User provided reference genes

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