Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 1.7e-128 462.6 229 100.0
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 1.5e-116 422.9 217 96.8
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 6.7e-112 407.5 221 92.8
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 4.0e-109 398.3 223 90.6
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 2.6e-108 395.6 223 89.7
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 8.4e-107 390.6 223 87.4
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 5.5e-106 387.9 212 92.9
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 2.1e-105 386.0 223 86.1
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 3.5e-105 385.2 223 86.5
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 3.0e-104 382.1 223 84.8
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 1.5e-103 379.8 223 84.3
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 3.3e-103 378.6 223 84.3
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 3.3e-103 378.6 223 84.3
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 7.4e-103 377.5 223 84.3
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 7.4e-103 377.5 223 84.3
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 9.6e-103 377.1 223 84.3
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 2.1e-102 375.9 223 83.9
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 2.1e-102 375.9 223 83.9
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 1.1e-101 373.6 223 83.4
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 9.7e-95 350.5 220 79.5
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 1.1e-93 347.1 223 78.5
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 3.3e-87 325.5 217 76.0
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 6.3e-86 321.2 217 76.0
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 8.2e-86 320.9 219 73.5
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 3.1e-85 318.9 219 72.1
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 3.1e-85 318.9 214 71.0
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 5.3e-85 318.2 220 72.7
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 9.1e-85 317.4 217 73.3
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 1.2e-84 317.0 222 70.7
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 1.5e-84 316.6 217 75.1
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 3.4e-84 315.5 222 73.0
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 3.4e-84 315.5 214 70.1
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 4.5e-84 315.1 221 72.9
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 4.5e-84 315.1 215 74.0
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 7.7e-84 314.3 215 72.6
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 1.0e-83 313.9 218 72.0
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 1.7e-83 313.2 222 71.6
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 2.2e-83 312.8 219 72.1
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 2.2e-83 312.8 217 73.3
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 6.5e-83 311.2 219 71.2
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 8.5e-83 310.8 217 72.8
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 8.5e-83 310.8 220 70.9
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 1.1e-82 310.5 219 71.7
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 1.1e-82 310.5 207 76.3
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 1.9e-82 309.7 220 70.5
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.9e-82 309.7 222 70.7
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 2.5e-82 309.3 219 72.1
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 3.2e-82 308.9 217 71.4
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 4.2e-82 308.5 217 71.4
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 5.5e-82 308.1 217 71.9
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 5.5e-82 308.1 223 70.0
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 7.2e-82 307.8 217 72.4
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 1.2e-81 307.0 237 67.9
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 2.1e-81 306.2 217 72.4
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 2.7e-81 305.8 222 70.3
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 2.7e-81 305.8 220 68.6
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 2.7e-81 305.8 217 70.5
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 2.7e-81 305.8 217 70.5
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 4.7e-81 305.1 217 71.9
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 1.0e-80 303.9 222 68.9
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 2.3e-80 302.8 220 69.5
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 3.0e-80 302.4 220 69.5
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 3.0e-80 302.4 217 71.4
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 3.0e-80 302.4 218 69.7
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 3.0e-80 302.4 217 70.0
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 3.9e-80 302.0 217 72.4
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 3.9e-80 302.0 228 69.3
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 5.1e-80 301.6 217 71.4
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 6.7e-80 301.2 220 69.5
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 8.8e-80 300.8 218 70.2
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.1e-79 300.4 227 68.7
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 4.4e-79 298.5 220 68.2
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 1.3e-78 297.0 220 69.1
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.3e-78 297.0 218 71.1
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.8e-78 295.8 217 70.0
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 3.7e-78 295.4 217 70.5
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 4.8e-78 295.0 198 71.7
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.8e-78 295.0 217 69.6
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 8.2e-78 294.3 218 70.2
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 8.2e-78 294.3 225 67.1
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 1.1e-77 293.9 200 72.5
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.4e-77 293.5 207 74.4
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 3.1e-77 292.4 218 70.6
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 3.1e-77 292.4 218 70.6
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 4.1e-77 292.0 218 67.4
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 5.3e-77 291.6 217 66.8
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 2.6e-76 289.3 207 71.0
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 1.0e-75 287.3 198 69.2
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 2.2e-75 286.2 207 71.0
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 5.2e-72 275.0 221 65.6
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 6.7e-72 274.6 207 64.3
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 8.8e-72 274.2 220 64.1
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.1e-71 273.9 206 65.5
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 3.5e-68 262.3 217 63.6
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 3.5e-68 262.3 213 62.9
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 1.7e-67 260.0 208 63.5
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 6.5e-67 258.1 219 63.9
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 2.5e-66 256.1 204 66.2
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 2.7e-65 252.7 220 60.9
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 2.7e-65 252.7 223 56.5
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 1.4e-64 250.4 183 65.6
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 3.4e-63 245.7 157 75.8
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 4.4e-63 245.4 201 63.7
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 1.8e-61 240.0 153 75.8
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 5.9e-60 235.0 146 76.0
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.7e-59 233.4 212 56.6
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 2.0e-55 219.9 142 77.5
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 2.2e-54 216.5 149 71.8
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 7.0e-53 211.5 263 49.0
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 2.6e-47 193.0 180 50.0
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 1.8e-40 170.2 190 43.7
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.7e-33 145.6 101 73.3
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 8.0e-33 144.8 214 42.5
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.0e-27 127.9 96 63.5
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 6.8e-24 115.2 89 60.7
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 2.6e-23 113.2 65 80.0
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.9e-22 109.8 86 64.0
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 9.6e-18 94.7 70 61.4
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 4.9e-14 82.4 68 61.8
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 1.4e-13 80.9 66 60.6
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 1.5e-10 70.9 146 34.9
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 5.8e-07 58.9 41 61.0


User provided reference genes

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