Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33401 Brassica carinata HOM05D000148 ORTHO05D000081 3.1e-47 191.4 96 100.0
BraA03t13999Z Brassica rapa HOM05D000148 ORTHO05D000081 4.9e-40 167.5 95 88.4
BcaC06g32927 Brassica carinata HOM05D000148 ORTHO05D000081 2.4e-39 165.2 95 85.3
BcaNung00288 Brassica carinata HOM05D000148 ORTHO05D000081 1.5e-36 156.0 90 81.1
BcaC09g50209 Brassica carinata HOM05D000148 ORTHO05D000081 1.6e-35 152.5 92 80.4
BcaC09g50212 Brassica carinata HOM05D000148 ORTHO05D000081 1.6e-35 152.5 92 80.4
BolC1t02715H Brassica oleracea HOM05D000148 ORTHO05D000081 1.6e-35 152.5 92 80.4
BolC1t02713H Brassica oleracea HOM05D000148 ORTHO05D000081 2.8e-35 151.8 92 80.4
C01p27810 Brassica napus HOM05D000148 ORTHO05D000081 3.6e-35 151.4 92 79.3
A01p22270 Brassica napus HOM05D000148 ORTHO05D000081 4.7e-35 151.0 92 80.4
BraA01t02140Z Brassica rapa HOM05D000148 ORTHO05D000081 1.0e-34 149.8 92 79.3
BcaNung00289 Brassica carinata HOM05D000148 ORTHO05D000081 4.0e-34 147.9 92 80.4
BcaC09g50214 Brassica carinata HOM05D000148 ORTHO05D000081 2.4e-31 138.7 85 80.0
Sp7g13490 Schrenkiella parvula HOM05D000148 ORTHO05D000081 9.2e-31 136.7 95 70.5
Thhalv10026919m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 2.0e-30 135.6 94 70.2
Thhalv10025191m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 4.6e-30 134.4 94 69.1
A03p49000 Brassica napus HOM05D000148 ORTHO05D000081 9.5e-28 126.7 68 92.6
BcaC05g24845 Brassica carinata HOM05D000148 ORTHO05D000081 1.2e-27 126.3 95 67.4
BcaC07g37881 Brassica carinata HOM05D000148 ORTHO05D000081 4.7e-27 124.4 95 65.3
CARHR219470 Cardamine hirsuta HOM05D000148 ORTHO05D000081 6.2e-27 124.0 94 62.8
Sp7g13510 Schrenkiella parvula HOM05D000148 ORTHO05D000081 1.1e-26 123.2 93 67.7
BraA08t33164Z Brassica rapa HOM05D000148 ORTHO05D000081 1.8e-26 122.5 96 63.5
BcaB04g18286 Brassica carinata HOM05D000148 ORTHO05D000081 2.3e-26 122.1 96 66.7
AL8G20140 Arabidopsis lyrata HOM05D000148 ORTHO05D000081 4.0e-26 121.3 90 64.4
BcaB04g18291 Brassica carinata HOM05D000148 ORTHO05D000081 1.2e-25 119.8 97 64.9
BcaC05g27691 Brassica carinata HOM05D000148 ORTHO05D000081 4.4e-25 117.9 96 60.4
Thhalv10009698m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 7.1e-23 110.5 91 61.5
Aa31LG4G13520 Aethionema arabicum HOM05D000148 ORTHO05D000081 1.6e-22 109.4 94 59.6
Aa31LG4G13530 Aethionema arabicum HOM05D000148 ORTHO05D000081 1.6e-22 109.4 94 59.6
Aa31LG9G2120 Aethionema arabicum HOM05D000148 ORTHO05D000081 3.0e-21 105.1 93 55.9
Aa31LG4G13510 Aethionema arabicum HOM05D000148 ORTHO05D000081 5.1e-21 104.4 93 55.9
AL7G40200 Arabidopsis lyrata HOM05D000148 ORTHO05D000081 1.5e-20 102.8 90 60.0
Carub.0001s3194 Capsella rubella HOM05D000148 ORTHO05D000081 1.5e-20 102.8 93 55.9
AT4G15400 Arabidopsis thaliana HOM05D000148 ORTHO05D000081 3.3e-20 101.7 89 61.8
Aa31LG9G2110 Aethionema arabicum HOM05D000148 ORTHO05D000081 4.3e-20 101.3 91 54.9
Aa31LG9G2130 Aethionema arabicum HOM05D000148 ORTHO05D000081 9.5e-20 100.1 90 51.1
Aa31LG9G2140 Aethionema arabicum HOM05D000148 ORTHO05D000081 1.6e-19 99.4 90 53.3
Aa31LG4G13500 Aethionema arabicum HOM05D000148 ORTHO05D000081 2.1e-19 99.0 91 56.0
Sp1g29100 Schrenkiella parvula HOM05D000148 ORTHO05D000081 2.1e-19 99.0 96 56.2
THA.LOC104805996 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 3.6e-19 98.2 91 58.2
Carub.0007s2661 Capsella rubella HOM05D000148 ORTHO05D000081 2.3e-18 95.5 96 56.2
Aa31LG9G2150 Aethionema arabicum HOM05D000148 ORTHO05D000081 3.1e-18 95.1 87 56.3
CARHR222040 Cardamine hirsuta HOM05D000148 ORTHO05D000081 8.9e-18 93.6 81 61.7
Carub.0007s2664 Capsella rubella HOM05D000148 ORTHO05D000081 9.9e-17 90.1 84 58.3
BcaC02g08584 Brassica carinata HOM05D000148 ORTHO05D000081 1.7e-16 89.4 95 49.5
BolC4t26805H Brassica oleracea HOM05D000148 ORTHO05D000081 2.9e-16 88.6 95 49.5
A04p17520 Brassica napus HOM05D000148 ORTHO05D000081 6.4e-16 87.4 95 49.5
C04p52300 Brassica napus HOM05D000148 ORTHO05D000081 6.4e-16 87.4 95 49.5
BraA04t17375Z Brassica rapa HOM05D000148 ORTHO05D000081 6.4e-16 87.4 95 49.5
BcaB06g27852 Brassica carinata HOM05D000148 ORTHO05D000081 1.9e-15 85.9 89 53.9
AT5G47980 Arabidopsis thaliana HOM05D000148 ORTHO05D000081 1.2e-14 83.2 92 50.0
A04p17450 Brassica napus HOM05D000148 ORTHO05D000081 2.7e-14 82.0 93 49.5
BraA04t17368Z Brassica rapa HOM05D000148 ORTHO05D000081 2.7e-14 82.0 93 49.5
THA.LOC104825401 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 5.1e-13 77.8 74 54.1
THA.LOC104810282 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 1.1e-12 76.6 96 42.7
Thhalv10025255m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 2.5e-12 75.5 81 48.1
Thhalv10027368m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 2.5e-12 75.5 81 48.1
SpUn0314_0010 Schrenkiella parvula HOM05D000148 ORTHO05D000081 3.3e-12 75.1 85 47.1
Carub.0005s0767 Capsella rubella HOM05D000148 ORTHO05D000081 5.6e-12 74.3 95 45.3
AT4G15390 Arabidopsis thaliana HOM05D000148 ORTHO05D000081 2.8e-11 72.0 79 46.8
Carub.0005s0775 Capsella rubella HOM05D000148 ORTHO05D000081 3.6e-11 71.6 94 43.6
A09p57280 Brassica napus HOM05D000148 ORTHO05D000081 4.7e-11 71.2 70 51.4
Carub.0005s0854 Capsella rubella HOM05D000148 ORTHO05D000081 4.7e-11 71.2 85 47.1
Aa31LG9G2080 Aethionema arabicum HOM05D000148 ORTHO05D000081 6.2e-11 70.9 75 48.0
Aa31LG9G2100 Aethionema arabicum HOM05D000148 ORTHO05D000081 6.2e-11 70.9 73 49.3
BcaB04g19840 Brassica carinata HOM05D000148 ORTHO05D000081 6.2e-11 70.9 75 53.3
BcaNung00285 Brassica carinata HOM05D000148 ORTHO05D000081 6.2e-11 70.9 82 47.6
A09p06690 Brassica napus HOM05D000148 ORTHO05D000081 6.2e-11 70.9 75 53.3
BraA09t36315Z Brassica rapa HOM05D000148 ORTHO05D000081 6.2e-11 70.9 75 53.3
THA.LOC104821379 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 6.2e-11 70.9 75 50.7
C09p07450 Brassica napus HOM05D000148 ORTHO05D000081 8.1e-11 70.5 75 53.3
BolC9t53660H Brassica oleracea HOM05D000148 ORTHO05D000081 8.1e-11 70.5 75 53.3
AT5G23970 Arabidopsis thaliana HOM05D000148 ORTHO05D000081 1.8e-10 69.3 74 52.7
BcaC07g41032 Brassica carinata HOM05D000148 ORTHO05D000081 1.8e-10 69.3 70 51.4
C08p40360 Brassica napus HOM05D000148 ORTHO05D000081 1.8e-10 69.3 70 51.4
BolC8t51603H Brassica oleracea HOM05D000148 ORTHO05D000081 1.8e-10 69.3 70 51.4
BraA09t41121Z Brassica rapa HOM05D000148 ORTHO05D000081 1.8e-10 69.3 70 50.0
Aa31LG9G3790 Aethionema arabicum HOM05D000148 ORTHO05D000081 2.4e-10 68.9 75 49.3
BcaC09g50216 Brassica carinata HOM05D000148 ORTHO05D000081 3.1e-10 68.6 78 46.2
A01p22260 Brassica napus HOM05D000148 ORTHO05D000081 3.1e-10 68.6 78 46.2
BolC1t02711H Brassica oleracea HOM05D000148 ORTHO05D000081 3.1e-10 68.6 78 46.2
CARHR157950 Cardamine hirsuta HOM05D000148 ORTHO05D000081 3.1e-10 68.6 89 47.2
Thhalv10004258m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 3.1e-10 68.6 74 52.7
BcaB08g35596 Brassica carinata HOM05D000148 ORTHO05D000081 4.0e-10 68.2 79 46.8
Thhalv10027507m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 4.0e-10 68.2 78 44.9
SpUn0325_0010 Schrenkiella parvula HOM05D000148 ORTHO05D000081 4.0e-10 68.2 78 46.2
AL6G35290 Arabidopsis lyrata HOM05D000148 ORTHO05D000081 5.2e-10 67.8 74 52.7
BcaB08g35120 Brassica carinata HOM05D000148 ORTHO05D000081 5.2e-10 67.8 79 46.8
Aa31LG5G1520 Aethionema arabicum HOM05D000148 ORTHO05D000081 6.8e-10 67.4 68 52.9
Aa31LG9G3800 Aethionema arabicum HOM05D000148 ORTHO05D000081 6.8e-10 67.4 68 52.9
C01p27790 Brassica napus HOM05D000148 ORTHO05D000081 6.8e-10 67.4 78 44.9
Carub.0007s2666 Capsella rubella HOM05D000148 ORTHO05D000081 6.8e-10 67.4 78 44.9
THA.LOC104804983 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 6.8e-10 67.4 81 46.9
CARHR222060 Cardamine hirsuta HOM05D000148 ORTHO05D000081 8.9e-10 67.0 74 43.2
Carub.0006s2170 Capsella rubella HOM05D000148 ORTHO05D000081 1.2e-09 66.6 74 50.0
Thhalv10025210m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 1.2e-09 66.6 78 46.2
BraA01t02139Z Brassica rapa HOM05D000148 ORTHO05D000081 1.5e-09 66.2 78 43.6
THA.LOC104805812 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 2.0e-09 65.9 73 49.3
AL8G20050 Arabidopsis lyrata HOM05D000148 ORTHO05D000081 2.6e-09 65.5 85 43.5
Manes.12G016900 Manihot esculenta HOM05D000148 ORTHO05D000081 3.4e-09 65.1 91 41.8
Sp1g23380 Schrenkiella parvula HOM05D000148 ORTHO05D000081 5.8e-09 64.3 76 40.8
AT1G24420 Arabidopsis thaliana HOM05D000148 ORTHO05D000081 9.9e-09 63.5 86 34.9
Carub.0005s0771 Capsella rubella HOM05D000148 ORTHO05D000081 9.9e-09 63.5 95 38.9
BcaB02g09577 Brassica carinata HOM05D000148 ORTHO05D000081 1.3e-08 63.2 73 50.7
CANSAT01G3026 Cannabis sativa HOM05D000148 ORTHO05D000081 1.3e-08 63.2 80 42.5
A06p28080 Brassica napus HOM05D000148 ORTHO05D000081 2.2e-08 62.4 88 42.0
AT3G30280 Arabidopsis thaliana HOM05D000148 ORTHO05D000081 2.9e-08 62.0 78 42.3
AL1G40520 Arabidopsis lyrata HOM05D000148 ORTHO05D000081 3.8e-08 61.6 86 36.0
AL5G19920 Arabidopsis lyrata HOM05D000148 ORTHO05D000081 3.8e-08 61.6 78 41.0
AL7G41110 Arabidopsis lyrata HOM05D000148 ORTHO05D000081 3.8e-08 61.6 77 41.6
AT5G47950 Arabidopsis thaliana HOM05D000148 ORTHO05D000081 3.8e-08 61.6 77 45.5
Rhsim12G0036200 Rhododendron simsii HOM05D000148 ORTHO05D000081 3.8e-08 61.6 87 47.1
BcaC05g26722 Brassica carinata HOM05D000148 ORTHO05D000081 4.9e-08 61.2 76 38.2
A09p38750 Brassica napus HOM05D000148 ORTHO05D000081 4.9e-08 61.2 90 35.6
BraA09t39383Z Brassica rapa HOM05D000148 ORTHO05D000081 4.9e-08 61.2 90 34.4
THA.LOC104818159 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 4.9e-08 61.2 79 48.1
RcHm_v2.0_Chr5g0026751 Rosa chinensis HOM05D000148 ORTHO05D000081 6.4e-08 60.8 96 37.5
BraA06t25749Z Brassica rapa HOM05D000148 ORTHO05D000081 8.4e-08 60.5 88 42.0
Carub.0007s2662 Capsella rubella HOM05D000148 ORTHO05D000081 8.4e-08 60.5 91 44.0
Rhsim12G0036300 Rhododendron simsii HOM05D000148 ORTHO05D000081 8.4e-08 60.5 70 51.4
THA.LOC104825531 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 1.4e-07 59.7 67 43.3
MD16G1109400 Malus domestica HOM05D000148 ORTHO05D000081 1.9e-07 59.3 89 47.2
RcHm_v2.0_Chr5g0026761 Rosa chinensis HOM05D000148 ORTHO05D000081 1.9e-07 59.3 94 40.4
FvH4_3g15910 Fragaria vesca HOM05D000148 ORTHO05D000081 2.4e-07 58.9 87 40.2
vmacro01095 Vaccinium macrocarpon HOM05D000148 ORTHO05D000081 3.2e-07 58.5 70 48.6
AL7G40230 Arabidopsis lyrata HOM05D000148 ORTHO05D000081 4.2e-07 58.2 77 39.0
Carub.0001s2568 Capsella rubella HOM05D000148 ORTHO05D000081 4.2e-07 58.2 86 34.9
MD10G1201000 Malus domestica HOM05D000148 ORTHO05D000081 4.2e-07 58.2 91 38.5
C05p25850 Brassica napus HOM05D000148 ORTHO05D000081 5.4e-07 57.8 76 38.2
BcaC04g24261 Brassica carinata HOM05D000148 ORTHO05D000081 7.1e-07 57.4 86 41.9
MD13G1109500 Malus domestica HOM05D000148 ORTHO05D000081 7.1e-07 57.4 92 38.0
THA.LOC104807719 Tarenaya hassleriana HOM05D000148 ORTHO05D000081 9.3e-07 57.0 77 35.1
Aa31LG8G11770 Aethionema arabicum HOM05D000148 ORTHO05D000081 1.2e-06 56.6 82 37.8
A09p06700 Brassica napus HOM05D000148 ORTHO05D041973 1.2e-06 56.6 48 60.4
BraA09t36316Z Brassica rapa HOM05D000148 ORTHO05D041973 1.2e-06 56.6 48 60.4
Duzib248G1174 Durio zibethinus HOM05D000148 ORTHO05D000081 1.2e-06 56.6 97 36.1
Thhalv10009496m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 1.2e-06 56.6 74 39.2
BcaC05g26527 Brassica carinata HOM05D000148 ORTHO05D000081 1.6e-06 56.2 76 36.8
BolC5t31305H Brassica oleracea HOM05D000148 ORTHO05D000081 1.6e-06 56.2 76 36.8
CARHR026710 Cardamine hirsuta HOM05D000148 ORTHO05D000081 1.6e-06 56.2 76 38.2
Thhalv10007667m.g Eutrema salsugineum HOM05D000148 ORTHO05D000081 1.6e-06 56.2 76 36.8
MD05G1218200 Malus domestica HOM05D000148 ORTHO05D000081 1.6e-06 56.2 91 40.7
PGR119G0355 Punica granatum HOM05D000148 ORTHO05D000081 1.6e-06 56.2 79 43.0
FvH4_3g15920 Fragaria vesca HOM05D000148 ORTHO05D000081 2.1e-06 55.8 94 40.4
FAN11G2496 Fragaria x ananassa HOM05D000148 ORTHO05D000081 2.1e-06 55.8 94 40.4
FAN21G1443 Fragaria x ananassa HOM05D000148 ORTHO05D000081 2.1e-06 55.8 94 40.4
MBI18_g45753_MAGBIO Magnolia biondii HOM05D000148 ORTHO05D000081 2.1e-06 55.8 80 43.8
Actinidia29371 Actinidia chinensis HOM05D000148 ORTHO05D000081 2.7e-06 55.5 79 44.3
Ciclev10006464m.g Citrus clementina HOM05D000148 ORTHO05D000081 2.7e-06 55.5 82 39.0
MD05G1218500 Malus domestica HOM05D000148 ORTHO05D000081 2.7e-06 55.5 93 36.6
Medtr2g064495 Medicago truncatula HOM05D000079 ORTHO05D000211 2.7e-06 55.5 73 38.4
Medtr2g105330 Medicago truncatula HOM05D000079 ORTHO05D000211 2.7e-06 55.5 73 38.4
TWI39G1088 Tripterygium wilfordii HOM05D000148 ORTHO05D000081 2.7e-06 55.5 84 40.5
Nitab4.5_0002775g0010 Nicotiana tabacum HOM05D000148 ORTHO05D000081 3.5e-06 55.1 80 40.0
Actinidia08102 Actinidia chinensis HOM05D000148 ORTHO05D000081 4.6e-06 54.7 58 53.4
Ca_06648_v3 Cicer arietinum L. HOM05D000079 ORTHO05D000211 4.6e-06 54.7 99 33.3
ClCG01G014530 Citrullus lanatus HOM05D000148 ORTHO05D000081 6.0e-06 54.3 81 35.8
FAN25G3472 Fragaria x ananassa HOM05D000148 ORTHO05D000081 6.0e-06 54.3 87 37.9
Rhsim08G0186100 Rhododendron simsii HOM05D000148 ORTHO05D000081 6.0e-06 54.3 86 39.5
Sabra10G0048800 Salix brachista HOM05D000148 ORTHO05D000081 6.0e-06 54.3 61 47.5
vmacro19232 Vaccinium macrocarpon HOM05D000148 ORTHO05D000081 6.0e-06 54.3 90 36.7
FAN07G1543 Fragaria x ananassa HOM05D000148 ORTHO05D000081 7.8e-06 53.9 93 37.6
PSO063G7629 Papaver somniferum HOM05D000148 ORTHO05D000081 7.8e-06 53.9 56 44.6
Psat7g262560 Pisum sativum HOM05D000079 ORTHO05D000211 7.8e-06 53.9 73 35.6
Potri.010G056300 Populus trichocarpa HOM05D000148 ORTHO05D000081 7.8e-06 53.9 81 37.0
Potri.010G056450 Populus trichocarpa HOM05D000148 ORTHO05D000081 7.8e-06 53.9 81 37.0
Rhsim08G0185900 Rhododendron simsii HOM05D000148 ORTHO05D000081 7.8e-06 53.9 93 36.6
Sabra10G0048700 Salix brachista HOM05D000148 ORTHO05D000081 7.8e-06 53.9 61 47.5
Sabra10G0049000 Salix brachista HOM05D000148 ORTHO05D000081 7.8e-06 53.9 61 47.5
TWI39G0543 Tripterygium wilfordii HOM05D000148 ORTHO05D000081 7.8e-06 53.9 87 39.1


User provided reference genes

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