Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33378 Brassica carinata HOM05D007133 ORTHO05D008954 1.1e-41 172.9 91 100.0
C07p46740 Brassica napus HOM05D007133 ORTHO05D008954 4.2e-41 171.0 91 98.9
BolC7t45192H Brassica oleracea HOM05D007133 ORTHO05D008954 4.2e-41 171.0 91 98.9
BcaC06g33021 Brassica carinata HOM05D007133 ORTHO05D008954 2.5e-38 161.8 91 93.4
A03p48620 Brassica napus HOM05D007133 ORTHO05D008954 3.3e-38 161.4 89 93.3
BraA03t13967Z Brassica rapa HOM05D007133 ORTHO05D008954 4.3e-38 161.0 91 92.3
A09p45100 Brassica napus HOM05D007133 ORTHO05D008954 1.6e-37 159.1 91 91.2
BraA09t39971Z Brassica rapa HOM05D007133 ORTHO05D008954 1.6e-37 159.1 91 91.2
BcaB01g00452 Brassica carinata HOM05D007133 ORTHO05D008954 8.1e-37 156.8 91 90.1
C08p27290 Brassica napus HOM05D007133 ORTHO05D008954 8.1e-37 156.8 91 90.1
BolC8t50346H Brassica oleracea HOM05D007133 ORTHO05D008954 8.1e-37 156.8 91 90.1
Thhalv10010861m.g Eutrema salsugineum HOM05D007133 ORTHO05D008954 6.9e-36 153.7 91 89.0
Carub.0005s1836 Capsella rubella HOM05D007133 ORTHO05D008954 6.4e-34 147.1 91 82.4
CARHR161670 Cardamine hirsuta HOM05D007133 ORTHO05D008954 5.5e-33 144.1 90 85.6
AT3G52040 Arabidopsis thaliana HOM05D007133 ORTHO05D008954 7.1e-33 143.7 91 80.2
AL5G32580 Arabidopsis lyrata HOM05D007133 ORTHO05D008954 2.1e-32 142.1 91 80.2
Aa31LG10G7080 Aethionema arabicum HOM05D007133 ORTHO05D008954 6.0e-32 140.6 92 82.6
FvH4_7g01820 Fragaria vesca HOM05D007133 ORTHO05D008954 3.2e-25 118.2 87 69.0
FAN01G1667 Fragaria x ananassa HOM05D007133 ORTHO05D008954 3.2e-25 118.2 87 69.0
Ciclev10033166m.g Citrus clementina HOM05D007133 ORTHO05D008954 7.1e-25 117.1 89 71.9
RcHm_v2.0_Chr1g0318451 Rosa chinensis HOM05D007133 ORTHO05D008954 7.1e-25 117.1 87 67.8
THA.LOC104817576 Tarenaya hassleriana HOM05D007133 ORTHO05D008954 2.7e-24 115.2 88 67.0
Sc10g0000360 Simmondsia chinensis HOM05D007133 ORTHO05D008954 4.6e-24 114.4 85 64.7
Cc02_g28790 Coffea canephora HOM05D007133 ORTHO05D008954 1.0e-23 113.2 87 65.5
CiPaw.14G003100 Carya illinoinensis HOM05D007133 ORTHO05D008954 3.9e-23 111.3 87 66.7
Peaxi162Scf01270g00118 Petunia axillaris HOM05D007133 ORTHO05D008954 3.9e-23 111.3 87 65.5
CsaV3_7G030730 Cucumis sativus L. HOM05D007133 ORTHO05D008954 5.1e-23 110.9 85 65.9
Nn7g36332 Nelumbo nucifera HOM05D007133 ORTHO05D008954 5.1e-23 110.9 87 64.4
GSVIVG01032212001 Vitis vinifera HOM05D007133 ORTHO05D008954 5.1e-23 110.9 87 65.5
Manes.10G136200 Manihot esculenta HOM05D007133 ORTHO05D008954 8.7e-23 110.2 91 68.1
Actinidia21538 Actinidia chinensis HOM05D007133 ORTHO05D008954 1.1e-22 109.8 84 66.7
Eucgr.G03322 Eucalyptus grandis HOM05D007133 ORTHO05D008954 1.9e-22 109.0 87 64.4
Sabra09G0041600 Salix brachista HOM05D007133 ORTHO05D008954 1.9e-22 109.0 90 66.7
Oeu027371.1 Olea europaea HOM05D007133 ORTHO05D008954 2.5e-22 108.6 91 64.8
Dinv03122 Davidia involucrata HOM05D007133 ORTHO05D008954 3.3e-22 108.2 91 64.8
Dinv09308 Davidia involucrata HOM05D007133 ORTHO05D008954 3.3e-22 108.2 91 64.8
Sed0015487 Sechium edule HOM05D007133 ORTHO05D008954 7.4e-22 107.1 88 62.5
MD02G1300200 Malus domestica HOM05D007133 ORTHO05D008954 9.7e-22 106.7 87 63.2
MD07G1024700 Malus domestica HOM05D007133 ORTHO05D008954 9.7e-22 106.7 88 63.6
Potri.009G056800 Populus trichocarpa HOM05D007133 ORTHO05D008954 1.3e-21 106.3 90 64.4
Ah.10g038590 Amaranthus hybridus HOM05D007133 ORTHO05D008954 1.6e-21 105.9 85 60.0
CANSAT80G0888 Cannabis sativa HOM05D007133 ORTHO05D008954 1.6e-21 105.9 88 67.0
Potri.001G262000 Populus trichocarpa HOM05D007133 ORTHO05D008954 1.6e-21 105.9 87 62.1
Atru.chr11.2512 Acer truncatum HOM05D007133 ORTHO05D008954 2.2e-21 105.5 90 61.1
arahy.Tifrunner.gnm1.ann1.PZX0PK Arachis hypogaea HOM05D007133 ORTHO05D008954 2.2e-21 105.5 88 63.6
Lalb_Chr25g0282521 Lupinus albus HOM05D007133 ORTHO05D008954 2.2e-21 105.5 88 64.8
Nitab4.5_0008942g0020 Nicotiana tabacum HOM05D007133 ORTHO05D008954 2.2e-21 105.5 87 64.4
CSS0001581 Camellia sinensis var. sinensis HOM05D007133 ORTHO05D008954 3.7e-21 104.8 87 62.1
FAN10G0509 Fragaria x ananassa HOM05D007133 ORTHO05D008954 4.8e-21 104.4 79 67.1
Lalb_Chr04g0263851 Lupinus albus HOM05D007133 ORTHO05D008954 4.8e-21 104.4 87 60.9
Hund26515 Selenicereus undatus HOM05D007133 ORTHO05D008954 4.8e-21 104.4 87 58.6
arahy.Tifrunner.gnm1.ann1.1B9UE2 Arachis hypogaea HOM05D007133 ORTHO05D008954 6.3e-21 104.0 77 67.5
EL10Ac2g04374 Beta vulgaris HOM05D007133 ORTHO05D008954 6.3e-21 104.0 89 57.3
Gohir.A12G100700 Gossypium hirsutum HOM05D007133 ORTHO05D008954 6.3e-21 104.0 87 62.1
Gohir.D12G103551 Gossypium hirsutum HOM05D007133 ORTHO05D008954 6.3e-21 104.0 87 62.1
Gorai.008G112700 Gossypium raimondii HOM05D007133 ORTHO05D008954 6.3e-21 104.0 87 62.1
Phvul.011G010800 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 6.3e-21 104.0 87 59.8
vmacro21138 Vaccinium macrocarpon HOM05D007133 ORTHO05D008954 6.3e-21 104.0 87 60.9
Zm00001eb332910 Zea mays HOM05D007133 ORTHO05D008954 6.3e-21 104.0 87 60.9
Glyma.09G226900 Glycine max HOM05D007133 ORTHO05D008954 8.2e-21 103.6 77 64.9
Glyma.12G009900 Glycine max HOM05D007133 ORTHO05D008954 8.2e-21 103.6 77 64.9
Duzib268G0834 Durio zibethinus HOM05D007133 ORTHO05D008954 1.1e-20 103.2 87 62.1
COL.COLO4_12337 Corchorus olitorius HOM05D007133 ORTHO05D008954 1.4e-20 102.8 91 59.3
PSO063G0957 Papaver somniferum HOM05D007133 ORTHO05D008954 1.4e-20 102.8 87 60.9
PGR031G3629 Punica granatum HOM05D007133 ORTHO05D008954 1.4e-20 102.8 87 57.5
MELO3C023583.2 Cucumis melo HOM05D007133 ORTHO05D008954 1.8e-20 102.4 99 56.6
Migut.N01798 Erythranthe guttata HOM05D007133 ORTHO05D008954 1.8e-20 102.4 87 59.8
Medtr0512s0010 Medicago truncatula HOM05D007133 ORTHO05D008954 1.8e-20 102.4 82 61.0
Prupe.2G024400 Prunus persica HOM05D007133 ORTHO05D008954 1.8e-20 102.4 87 60.9
TAR633G1269 Trochodendron aralioides HOM05D007133 ORTHO05D008954 1.8e-20 102.4 86 61.6
AUR62023097 Chenopodium quinoa HOM05D007133 ORTHO05D008954 2.4e-20 102.1 87 59.8
SGA_v2.0_scaffold5G02955 Striga asiatica HOM05D007133 ORTHO05D008954 2.4e-20 102.1 87 59.8
Thecc.01G406600 Theobroma cacao HOM05D007133 ORTHO05D008954 2.4e-20 102.1 77 67.5
Lsat_1_v5_gn_1_104961 Lactuca sativa HOM05D007133 ORTHO05D008954 3.1e-20 101.7 86 59.3
Lj3g0009786 Lotus japonicus HOM05D007133 ORTHO05D008954 3.1e-20 101.7 82 64.6
PSO170G5856 Papaver somniferum HOM05D007133 ORTHO05D008954 3.1e-20 101.7 87 59.8
ECA248G0684 Erigeron canadensis HOM05D007133 ORTHO05D008954 4.1e-20 101.3 77 67.5
HanXRQChr06g0179721 Helianthus annuus HOM05D007133 ORTHO05D008954 4.1e-20 101.3 81 63.0
TPR.G30180 Trifolium pratense HOM05D007133 ORTHO05D008954 4.1e-20 101.3 82 61.0
TWI53G1532 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 4.1e-20 101.3 87 60.9
Phvul.001G156100 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 5.3e-20 100.9 77 63.6
TWI09G1631 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 1.2e-19 99.8 90 61.1
Ca_26645_v3 Cicer arietinum L. HOM05D007133 ORTHO05D008954 1.5e-19 99.4 89 59.6
Solyc01g087880.3 Solanum lycopersicum HOM05D007133 ORTHO05D008954 2.0e-19 99.0 90 64.4
CDE08G1151 Ceratophyllum demersum HOM05D007133 ORTHO05D008954 3.4e-19 98.2 87 62.1
Sopen01g034810 Solanum pennellii HOM05D007133 ORTHO05D008954 3.4e-19 98.2 89 61.8
PGSC0003DMG400006836 Solanum tuberosum HOM05D007133 ORTHO05D008954 5.9e-19 97.4 89 61.8
Aqoxy1G00141 Aquilegia oxysepala HOM05D007133 ORTHO05D008954 7.6e-19 97.1 77 64.9
Nitab4.5_0001244g0090 Nicotiana tabacum HOM05D007133 ORTHO05D008954 4.2e-17 91.3 113 49.6
ClCG09G004410 Citrullus lanatus HOM05D007133 ORTHO05D008954 5.5e-17 90.9 117 46.2
Eucgr.G03325 Eucalyptus grandis HOM05D007133 ORTHO05D008954 6.1e-16 87.4 82 57.3
SalBow6G3002 Salvia bowleyana HOM05D007133 ORTHO05D008954 6.7e-15 84.0 122 41.8
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.9e-14 82.4 82 58.5
unitig_8.g3622 Utricularia gibba HOM05D007133 ORTHO05D008954 7.4e-14 80.5 71 62.0
Pp3c9_17680 Physcomitrium patens HOM05D007133 ORTHO05D008954 1.7e-13 79.3 90 53.3
AagrBONN_evm.TU.Sc2ySwM_344.2738 Anthoceros agrestis HOM05D007133 ORTHO05D008954 4.8e-13 77.8 78 57.7
Medtr4g101060 Medicago truncatula HOM05D007133 ORTHO05D008954 1.1e-12 76.6 59 59.3
Dinv09304 Davidia involucrata HOM05D007133 ORTHO05D008954 1.4e-12 76.3 62 64.5
Haze_03143 Corylus avellana HOM05D007133 ORTHO05D008954 1.8e-12 75.9 155 36.1
Haze_03146 Corylus avellana HOM05D007133 ORTHO05D008954 1.8e-12 75.9 155 36.1
Mapoly0049s0103 Marchantia polymorpha HOM05D007133 ORTHO05D008954 6.9e-12 73.9 78 52.6
HPP92_001020 Vanilla planifolia HOM05D007133 ORTHO05D008954 4.5e-11 71.2 64 56.2
MBI19_g09240_MAGBIO Magnolia biondii HOM05D007133 ORTHO05D008954 1.3e-10 69.7 195 30.8
Psat7g197280 Pisum sativum HOM05D007133 ORTHO05D008954 3.2e-09 65.1 48 66.7
QL04p010011 Quercus lobata HOM05D007133 ORTHO05D008954 9.4e-09 63.5 48 66.7
Hma1.2p1_0685F.1_g203210 Hydrangea macrophylla HOM05D007133 ORTHO05D008954 1.4e-07 59.7 49 63.3
Rhsim01G0126300 Rhododendron simsii HOM05D007133 ORTHO05D008954 1.8e-07 59.3 48 62.5
Duzib133G0944 Durio zibethinus HOM05D007133 ORTHO05D008954 5.1e-07 57.8 48 62.5
Os01g0271700 Oryza sativa ssp. japonica HOM05D007133 ORTHO05D008954 5.1e-07 57.8 48 60.4
Rhsim01G0126100 Rhododendron simsii HOM05D007133 ORTHO05D008954 5.7e-06 54.3 40 62.5


User provided reference genes

Program Settings