Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33308 Brassica carinata HOM05D010645 ORTHO05D000724 8.3e-120 433.7 218 100.0
C07p45820 Brassica napus HOM05D010645 ORTHO05D000724 8.3e-120 433.7 218 100.0
BolC7t45103H Brassica oleracea HOM05D010645 ORTHO05D000724 8.3e-120 433.7 218 100.0
BraA03t13894Z Brassica rapa HOM05D010645 ORTHO05D000724 8.3e-96 354.0 218 84.4
A03p47840 Brassica napus HOM05D010645 ORTHO05D000724 1.1e-95 353.6 218 84.4
BcaC06g33088 Brassica carinata HOM05D010645 ORTHO05D000724 3.2e-87 325.5 219 79.5
Sp5g11590 Schrenkiella parvula HOM05D010645 ORTHO05D000724 7.3e-68 261.2 236 64.8
Thhalv10010715m.g Eutrema salsugineum HOM05D010645 ORTHO05D000724 1.8e-66 256.5 228 69.3
CARHR160140 Cardamine hirsuta HOM05D010645 ORTHO05D000724 4.5e-57 225.3 193 71.0
AL5G30770 Arabidopsis lyrata HOM05D010645 ORTHO05D000724 6.0e-46 188.3 213 58.7
Carub.0005s1695 Capsella rubella HOM05D010645 ORTHO05D000724 2.1e-38 163.3 230 51.3
THA.LOC104826988 Tarenaya hassleriana HOM05D010645 ORTHO05D000724 2.8e-35 152.9 237 45.1
Aa31LG4G18800 Aethionema arabicum HOM05D010645 ORTHO05D000724 3.7e-35 152.5 232 47.4
BcaC06g33311 Brassica carinata HOM05D010645 ORTHO05D000724 1.6e-30 137.1 71 93.0
AT3G50630 Arabidopsis thaliana HOM05D010645 ORTHO05D000724 1.2e-25 120.9 187 47.1
BcaC07g39524 Brassica carinata HOM05D010645 ORTHO05D000724 3.8e-24 115.9 114 61.4
A09p43650 Brassica napus HOM05D010645 ORTHO05D000724 7.2e-23 111.7 102 60.8
C08p25700 Brassica napus HOM05D010645 ORTHO05D000724 7.2e-23 111.7 103 65.0
THA.LOC104821273 Tarenaya hassleriana HOM05D010645 ORTHO05D000724 5.0e-16 89.0 218 36.7
RcHm_v2.0_Chr2g0105111 Rosa chinensis HOM05D000988 ORTHO05D000724 3.6e-14 82.8 205 33.7
Dinv29977 Davidia involucrata HOM05D000988 ORTHO05D000724 4.7e-14 82.4 204 32.8
Gorai.007G211800 Gossypium raimondii HOM05D000988 ORTHO05D000724 4.7e-14 82.4 176 39.2
GSVIVG01022145001 Vitis vinifera HOM05D000988 ORTHO05D000724 1.8e-13 80.5 149 36.9
Gohir.A11G191100 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.0e-13 79.7 172 37.2
Cpa.g.sc55.167 Carica papaya HOM05D000988 ORTHO05D000724 8.8e-13 78.2 230 31.7
Dinv39865 Davidia involucrata HOM05D000988 ORTHO05D000724 2.0e-12 77.0 232 35.3
FvH4_1g15820 Fragaria vesca HOM05D000988 ORTHO05D000724 2.0e-12 77.0 129 41.1
FAN19G1762 Fragaria x ananassa HOM05D000988 ORTHO05D000724 2.0e-12 77.0 129 41.1
FAN23G0955 Fragaria x ananassa HOM05D000988 ORTHO05D000724 2.0e-12 77.0 129 41.1
MD02G1170300 Malus domestica HOM05D000988 ORTHO05D000724 2.6e-12 76.6 134 41.8
Actinidia36500 Actinidia chinensis HOM05D000988 ORTHO05D000724 3.3e-12 76.3 226 34.1
Psat2g166040 Pisum sativum HOM05D000988 ORTHO05D000724 3.3e-12 76.3 218 32.6
Gohir.D11G197900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 4.4e-12 75.9 173 38.2
FAN26G1516 Fragaria x ananassa HOM05D000988 ORTHO05D000724 5.7e-12 75.5 178 36.0
Oeu021555.1 Olea europaea HOM05D000988 ORTHO05D000724 1.7e-11 73.9 127 40.2
Eucgr.H02008 Eucalyptus grandis HOM05D000988 ORTHO05D000724 2.2e-11 73.6 169 33.1
Oeu050777.1 Olea europaea HOM05D000988 ORTHO05D000724 2.2e-11 73.6 134 37.3
Thecc.01G054100 Theobroma cacao HOM05D000988 ORTHO05D000724 2.2e-11 73.6 136 40.4
Ciclev10026517m.g Citrus clementina HOM05D000988 ORTHO05D000724 2.8e-11 73.2 158 35.4
CSS0048797 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 3.7e-11 72.8 149 36.9
Glyma.17G175700 Glycine max HOM05D000988 ORTHO05D000724 3.7e-11 72.8 135 38.5
Gorai.008G074800 Gossypium raimondii HOM05D000988 ORTHO05D000724 3.7e-11 72.8 137 41.6
QL06p041825 Quercus lobata HOM05D000988 ORTHO05D000724 3.7e-11 72.8 143 39.2
FAN28G2662 Fragaria x ananassa HOM05D000988 ORTHO05D000724 4.8e-11 72.4 130 42.3
Gohir.A12G070500 Gossypium hirsutum HOM05D000988 ORTHO05D000724 6.3e-11 72.0 137 40.1
Nitab4.5_0000033g0440 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.1e-10 71.2 205 28.8
Gohir.D12G088300 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.4e-10 70.9 137 40.1
CSS0047121 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 1.8e-10 70.5 131 38.2
Cc07_g05910 Coffea canephora HOM05D000988 ORTHO05D000724 1.8e-10 70.5 157 35.0
arahy.Tifrunner.gnm1.ann1.C2Y005 Arachis hypogaea HOM05D000988 ORTHO05D000724 3.1e-10 69.7 145 35.2
TWI09G0765 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 3.1e-10 69.7 167 37.7
MD00G1044500 Malus domestica HOM05D000988 ORTHO05D000724 5.3e-10 68.9 131 43.5
Glyma.11G056700 Glycine max HOM05D000988 ORTHO05D000724 7.0e-10 68.6 212 29.2
Prupe.7G135000 Prunus persica HOM05D000988 ORTHO05D000724 7.0e-10 68.6 163 35.0
Glyma.01G185400 Glycine max HOM05D000988 ORTHO05D000724 9.1e-10 68.2 222 30.6
TWI73G0652 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 9.1e-10 68.2 224 29.9
Duzib248G0376 Durio zibethinus HOM05D000988 ORTHO05D000724 1.6e-09 67.4 133 33.8
Medtr5g017600 Medicago truncatula HOM05D000988 ORTHO05D000724 1.6e-09 67.4 207 30.0
Phvul.002G019500 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 1.6e-09 67.4 145 35.2
Phvul.003G244700 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 1.6e-09 67.4 174 34.5
MSTRG.23759 Avicennia marina HOM05D000988 ORTHO05D000724 2.0e-09 67.0 135 37.0
Duzib187G2011 Durio zibethinus HOM05D000988 ORTHO05D000724 2.0e-09 67.0 138 39.1
Duzib147G1455 Durio zibethinus HOM05D000988 ORTHO05D000724 2.7e-09 66.6 235 30.2
TAR376G0444 Trochodendron aralioides HOM05D000988 ORTHO05D000724 2.7e-09 66.6 134 38.1
QL11p036196 Quercus lobata HOM05D000988 ORTHO05D000724 3.5e-09 66.2 126 35.7
VMungo0251G3785 Vigna mungo HOM05D000988 ORTHO05D000724 3.5e-09 66.2 200 31.5
Hund16333 Selenicereus undatus HOM05D000988 ORTHO05D000724 4.5e-09 65.9 232 31.9
CSS0017394 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 5.9e-09 65.5 187 32.6
Sp4g02420 Schrenkiella parvula HOM05D000988 ORTHO05D000724 5.9e-09 65.5 150 34.0
PGSC0003DMG400015770 Solanum tuberosum HOM05D000988 ORTHO05D000724 5.9e-09 65.5 233 30.0
Peaxi162Scf00450g00739 Petunia axillaris HOM05D000988 ORTHO05D000724 7.7e-09 65.1 197 28.4
TPR.G21287 Trifolium pratense HOM05D000988 ORTHO05D000724 1.0e-08 64.7 127 40.2
DCAR_025727 Daucus carota HOM05D000988 ORTHO05D000724 1.3e-08 64.3 146 34.9
Migut.K00762 Erythranthe guttata HOM05D000988 ORTHO05D000724 1.3e-08 64.3 149 34.2
COL.COLO4_11396 Corchorus olitorius HOM05D000988 ORTHO05D000724 1.7e-08 63.9 125 40.0
CARHR293050 Cardamine hirsuta HOM05D000988 ORTHO05D000724 2.2e-08 63.5 142 37.3
Glyma.05G085000 Glycine max HOM05D000988 ORTHO05D000724 2.2e-08 63.5 140 38.6
Manes.13G127100 Manihot esculenta HOM05D000988 ORTHO05D000724 2.2e-08 63.5 144 34.7
Oeu004831.1 Olea europaea HOM05D000988 ORTHO05D000724 2.2e-08 63.5 140 37.9
COL.COLO4_32674 Corchorus olitorius HOM05D000988 ORTHO05D000724 2.9e-08 63.2 137 37.2
DCAR_010902 Daucus carota HOM05D000988 ORTHO05D000724 2.9e-08 63.2 134 32.8
Atru.chr3.348 Acer truncatum HOM05D000988 ORTHO05D000724 3.8e-08 62.8 222 29.3
CiPaw.01G019400 Carya illinoinensis HOM05D000988 ORTHO05D000724 3.8e-08 62.8 122 37.7
unitig_748.g8605 Utricularia gibba HOM05D000988 ORTHO05D000724 3.8e-08 62.8 148 37.2
AL4G13370 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 5.0e-08 62.4 171 33.3
Hma1.2p1_0461F.1_g157920 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 5.0e-08 62.4 200 33.0
Aqoxy5G01265 Aquilegia oxysepala HOM05D000988 ORTHO05D000724 6.5e-08 62.0 206 30.6
Lalb_Chr09g0323111 Lupinus albus HOM05D000988 ORTHO05D000724 6.5e-08 62.0 221 30.8
Manes.12G103100 Manihot esculenta HOM05D000988 ORTHO05D000724 6.5e-08 62.0 148 33.1
Potri.009G103600 Populus trichocarpa HOM05D000988 ORTHO05D000724 6.5e-08 62.0 202 29.7
Sopen02g035320 Solanum pennellii HOM05D000988 ORTHO05D000724 6.5e-08 62.0 223 30.9
CiPaw.05G052300 Carya illinoinensis HOM05D000988 ORTHO05D000724 8.5e-08 61.6 132 34.1
MBI02_g17335_MAGBIO Magnolia biondii HOM05D000988 ORTHO05D000724 8.5e-08 61.6 135 38.5
TAR625G0816 Trochodendron aralioides HOM05D000988 ORTHO05D000724 8.5e-08 61.6 163 36.2
vmacro05330 Vaccinium macrocarpon HOM05D000988 ORTHO05D000724 8.5e-08 61.6 138 37.0
Duzib052G0835 Durio zibethinus HOM05D000988 ORTHO05D000724 1.1e-07 61.2 215 26.0
Thhalv10011789m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 1.1e-07 61.2 133 33.8
Gohir.A10G092200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.1e-07 61.2 181 34.3
Sc03g0001510 Simmondsia chinensis HOM05D000988 ORTHO05D000724 1.1e-07 61.2 185 30.8
TAR381G0922 Trochodendron aralioides HOM05D000988 ORTHO05D000724 1.1e-07 61.2 146 37.0
Cfa005471 Carpinus fangiana HOM05D000988 ORTHO05D000724 1.5e-07 60.8 126 33.3
Gohir.A13G039400 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.5e-07 60.8 129 34.9
SalBow5G1305 Salvia bowleyana HOM05D000988 ORTHO05D000724 1.5e-07 60.8 187 32.6
SalBow5G4663 Salvia bowleyana HOM05D000988 ORTHO05D000724 1.5e-07 60.8 187 32.6
AT2G23430 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 1.9e-07 60.5 114 36.0
Gohir.D10G096200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.5e-07 60.1 63 52.4
Gorai.011G105400 Gossypium raimondii HOM05D000988 ORTHO05D000724 2.5e-07 60.1 63 52.4
Lj4g0023420 Lotus japonicus HOM05D000988 ORTHO05D000724 2.5e-07 60.1 126 37.3
Solyc02g090680.3 Solanum lycopersicum HOM05D000988 ORTHO05D000724 2.5e-07 60.1 223 30.9
CDE09G0883 Ceratophyllum demersum HOM05D001625 ORTHO05D002663 3.2e-07 59.7 131 34.4
Gohir.D13G037900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.2e-07 59.7 132 34.8
CiPaw.06G142900 Carya illinoinensis HOM05D000988 ORTHO05D000724 4.2e-07 59.3 142 33.8
Ca_24777_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 4.2e-07 59.3 126 34.1
Rhsim11G0166900 Rhododendron simsii HOM05D000988 ORTHO05D000724 4.2e-07 59.3 243 27.2
THA.LOC104814139 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 4.2e-07 59.3 177 30.5
arahy.Tifrunner.gnm1.ann1.CAW15G Arachis hypogaea HOM05D000988 ORTHO05D000724 5.5e-07 58.9 131 37.4
Potri.007G042300 Populus trichocarpa HOM05D000988 ORTHO05D000724 5.5e-07 58.9 153 33.3
AT1G49620 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 7.2e-07 58.5 137 34.3
MSTRG.15394 Avicennia marina HOM05D000988 ORTHO05D000724 7.2e-07 58.5 130 36.2
Carub.0001s3882 Capsella rubella HOM05D000988 ORTHO05D000724 9.4e-07 58.2 132 30.3
CAN.G836.73 Capsicum annuum HOM05D037394 ORTHO05D000724 9.4e-07 58.2 247 27.9
Dinv23609 Davidia involucrata HOM05D000988 ORTHO05D000724 9.4e-07 58.2 129 34.1
Lj2g0013232 Lotus japonicus HOM05D000988 ORTHO05D000724 9.4e-07 58.2 131 35.1
Cfa004004 Carpinus fangiana HOM05D000988 ORTHO05D000724 1.2e-06 57.8 118 36.4
CiPaw.02G008800 Carya illinoinensis HOM05D000988 ORTHO05D000724 1.2e-06 57.8 118 36.4
Thhalv10000332m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 1.2e-06 57.8 174 31.0
TAR628G0579 Trochodendron aralioides HOM05D000988 ORTHO05D000724 1.2e-06 57.8 232 29.7
CSS0039823 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 1.6e-06 57.4 135 34.8
ClCG02G012780 Citrullus lanatus HOM05D000988 ORTHO05D000724 1.6e-06 57.4 198 30.3
Lalb_Chr16g0378471 Lupinus albus HOM05D000988 ORTHO05D000724 1.6e-06 57.4 145 33.8
Nn5g30231 Nelumbo nucifera HOM05D000988 ORTHO05D000724 1.6e-06 57.4 135 34.8
A09p56920 Brassica napus HOM05D000988 ORTHO05D000724 2.1e-06 57.0 45 60.0
BraA09t41084Z Brassica rapa HOM05D000988 ORTHO05D000724 2.1e-06 57.0 45 60.0
Hma1.2p1_0370F.1_g137940 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 2.1e-06 57.0 136 33.1
Oeu009754.3 Olea europaea HOM05D000988 ORTHO05D000724 2.7e-06 56.6 62 48.4
Aa31LG7G13560 Aethionema arabicum HOM05D000988 ORTHO05D000724 3.6e-06 56.2 170 32.4
Carub.0004s0263 Capsella rubella HOM05D000988 ORTHO05D000724 3.6e-06 56.2 56 53.6
CARHR039660 Cardamine hirsuta HOM05D000988 ORTHO05D000724 3.6e-06 56.2 209 27.8
HanXRQChr14g0448261 Helianthus annuus HOM05D000988 ORTHO05D000724 3.6e-06 56.2 228 31.6
PGR102G1661 Punica granatum HOM05D000988 ORTHO05D000724 3.6e-06 56.2 153 30.1
Sp1g36490 Schrenkiella parvula HOM05D000988 ORTHO05D000724 3.6e-06 56.2 133 34.6
VMungo1215G1251 Vigna mungo HOM05D000988 ORTHO05D000724 3.6e-06 56.2 137 33.6
AT3G19150 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 4.7e-06 55.8 207 28.5
Rhsim10G0118800 Rhododendron simsii HOM05D000988 ORTHO05D000724 4.7e-06 55.8 128 35.9
Sabra09G0079300 Salix brachista HOM05D000988 ORTHO05D000724 4.7e-06 55.8 179 30.7
Oeu009721.1 Olea europaea HOM05D000988 ORTHO05D000724 6.1e-06 55.5 50 52.0
Actinidia00450 Actinidia chinensis HOM05D000988 ORTHO05D000724 8.0e-06 55.1 132 35.6
Ah.02g124190 Amaranthus hybridus HOM05D000988 ORTHO05D000724 8.0e-06 55.1 83 42.2
MSTRG.3421 Avicennia marina HOM05D000988 ORTHO05D000724 8.0e-06 55.1 132 35.6
Cpa.g.sc62.28 Carica papaya HOM05D000988 ORTHO05D000724 8.0e-06 55.1 142 35.9
Lsat_1_v5_gn_3_91021 Lactuca sativa HOM05D000988 ORTHO05D000724 8.0e-06 55.1 133 35.3
Sed0015277 Sechium edule HOM05D000988 ORTHO05D000724 8.0e-06 55.1 132 30.3


User provided reference genes

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