Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 4.3e-257 891.0 491 100.0
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 4.3e-257 891.0 491 100.0
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 6.4e-245 850.5 492 95.5
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.6e-243 845.9 494 95.7
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 5.1e-242 840.9 494 94.9
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 2.1e-216 755.7 509 86.8
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 6.9e-191 671.0 526 77.6
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.7e-181 639.8 515 74.0
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.2e-174 617.1 514 69.5
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 5.0e-173 611.7 521 70.6
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 6.1e-171 604.7 520 71.0
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 3.6e-163 578.9 516 69.8
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 4.7e-147 525.4 518 65.1
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.8e-131 473.0 535 55.7
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 4.0e-114 416.0 548 52.7
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 6.4e-112 408.7 542 48.9
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.4e-111 407.5 542 49.3
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.4e-111 407.5 542 48.7
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 2.1e-110 403.7 544 47.4
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.5e-110 402.9 545 48.3
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 2.3e-109 400.2 532 51.7
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.1e-109 399.1 543 47.7
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 8.1e-107 391.7 562 45.9
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.5e-105 387.5 554 51.6
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.7e-104 384.0 556 48.9
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 3.8e-104 382.9 554 48.9
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 6.4e-104 382.1 553 45.9
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 8.4e-104 381.7 554 51.1
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.4e-103 380.2 550 46.4
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 9.3e-103 378.3 552 49.6
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.0e-101 373.2 537 51.2
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.1e-101 372.5 557 46.5
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 6.6e-101 372.1 551 48.1
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.1e-100 371.3 532 51.1
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 5.6e-100 369.0 548 50.2
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 5.6e-100 369.0 526 49.4
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.3e-99 367.9 539 50.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.8e-98 364.0 537 46.0
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.1e-98 363.2 516 50.6
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.0e-98 362.8 524 45.2
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.0e-98 362.8 563 44.8
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.3e-98 362.5 516 50.6
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 9.0e-98 361.7 542 49.8
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.2e-97 361.3 541 47.0
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.0e-97 360.5 565 46.7
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 3.4e-97 359.8 538 47.6
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 3.4e-97 359.8 544 44.7
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 7.6e-97 358.6 540 47.0
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 9.9e-97 358.2 554 48.2
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.7e-96 357.5 568 44.4
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.7e-96 357.5 530 48.5
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 3.8e-96 356.3 519 45.9
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 6.4e-96 355.5 609 42.7
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.4e-96 355.5 552 47.6
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.4e-95 354.4 562 45.2
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 1.9e-95 354.0 520 47.7
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 4.2e-95 352.8 535 45.8
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 5.4e-95 352.4 552 45.5
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 5.4e-95 352.4 541 48.2
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 9.3e-95 351.7 553 47.7
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.6e-94 350.9 556 48.4
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.0e-93 348.2 549 43.9
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.8e-93 347.4 527 47.6
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 3.0e-93 346.7 563 42.8
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 5.1e-93 345.9 543 47.5
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 8.7e-93 345.1 550 47.1
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.1e-92 344.7 517 43.9
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.1e-92 344.7 529 43.1
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.9e-92 344.0 542 47.2
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 4.3e-92 342.8 546 42.9
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 5.6e-92 342.4 549 43.0
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 5.6e-92 342.4 532 44.2
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 7.4e-92 342.0 545 43.3
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.3e-91 341.3 548 47.8
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 3.7e-91 339.7 518 44.6
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.2e-91 339.0 553 45.8
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.4e-90 337.8 524 47.3
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-90 337.8 542 47.0
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.2e-89 334.7 548 46.7
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.5e-89 334.3 531 45.6
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.4e-89 333.2 526 47.3
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 4.5e-89 332.8 513 47.8
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.5e-89 332.8 535 46.7
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 7.6e-89 332.0 536 48.3
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.0e-88 331.6 518 47.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.3e-88 331.3 570 41.6
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-88 330.9 535 46.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.5e-87 327.0 548 45.3
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.5e-87 327.0 541 46.0
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 4.2e-87 326.2 548 43.6
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 5.5e-87 325.9 547 45.5
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 9.3e-87 325.1 552 40.0
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.2e-86 324.7 545 43.7
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 7.9e-86 322.0 524 46.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.0e-85 321.6 503 43.9
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.3e-85 321.2 549 46.4
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 8.7e-85 318.5 519 47.0
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.1e-84 318.2 474 44.3
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 7.4e-84 315.5 623 42.2
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.7e-83 313.2 565 41.6
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.8e-82 310.8 455 45.5
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.2e-81 308.1 552 40.4
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 8.4e-80 302.0 450 44.9
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 3.2e-79 300.1 420 46.9
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.8e-77 294.3 504 41.5
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.6e-73 280.4 570 36.8
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.6e-73 280.4 525 41.3
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 8.5e-72 275.4 543 41.3
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 3.6e-70 270.0 502 44.0
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 3.6e-70 270.0 502 44.0
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 3.0e-69 266.9 552 38.8
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.5e-68 264.6 506 43.7
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 6.9e-66 255.8 512 41.4
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 5.5e-63 246.1 232 58.2
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.2e-62 245.0 669 31.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 4.7e-62 243.0 270 52.2
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.8e-59 233.8 590 33.4
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 7.0e-58 229.2 410 41.5
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 8.0e-54 215.7 323 43.3
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 8.0e-54 215.7 592 33.6
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 1.0e-45 188.7 597 30.8
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.3e-45 187.6 398 39.2
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-42 178.7 387 41.1
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 5.7e-36 156.4 242 43.8
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.4e-34 151.8 128 62.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.1e-34 150.6 187 51.3
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.4e-34 149.8 283 39.2
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 5.9e-33 146.4 253 51.0
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.2e-30 138.7 656 26.7
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.8e-30 137.5 476 29.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 8.0e-30 136.0 511 30.7
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.4e-29 135.2 428 31.3
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 5.7e-28 129.8 112 65.2
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.6e-25 120.2 188 43.1
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.6e-24 115.9 239 41.8
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.3e-23 114.0 199 45.7
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 9.5e-23 112.5 230 36.5
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 3.1e-21 107.5 378 28.0
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 6.6e-16 89.7 410 27.3
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.9e-15 88.2 98 49.0
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.7e-14 83.6 59 69.5
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.0e-12 78.2 91 47.3
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 7.5e-12 76.3 184 29.9
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.9e-11 74.3 136 36.8
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.7e-11 73.9 226 31.9
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 9.2e-10 69.3 105 43.8
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 6.0e-09 66.6 337 26.7
A09p43120 Brassica napus HOM05D000091 ORTHO05D004312 5.6e-07 60.1 44 68.2
BraA09t39782Z Brassica rapa HOM05D000091 ORTHO05D004312 5.6e-07 60.1 44 68.2
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.6e-06 58.5 130 36.9


User provided reference genes

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