Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33240 Brassica carinata HOM05D010116 ORTHO05D012794 4.7e-136 488.0 276 100.0
BolC7t45041H Brassica oleracea HOM05D010116 ORTHO05D012794 4.7e-136 488.0 276 100.0
C07p45180 Brassica napus HOM05D010116 ORTHO05D012794 1.4e-124 449.9 276 93.8
BraA03t13834Z Brassica rapa HOM05D010116 ORTHO05D012794 9.2e-116 420.6 276 89.9
A03p47070 Brassica napus HOM05D010116 ORTHO05D012794 9.2e-108 394.0 276 86.2
BcaC06g33152 Brassica carinata HOM05D010116 ORTHO05D012794 1.4e-100 370.2 275 80.7
Sp2g24670 Schrenkiella parvula HOM05D010116 ORTHO05D012794 4.4e-78 295.4 296 68.2
Thhalv10005323m.g Eutrema salsugineum HOM05D010116 ORTHO05D012794 2.8e-64 249.6 258 58.5
BolC2t12210H Brassica oleracea HOM05D010116 ORTHO05D012794 3.1e-63 246.1 236 61.0
BcaC03g18087 Brassica carinata HOM05D010116 ORTHO05D012794 1.5e-57 227.3 222 60.8
BcaB07g29827 Brassica carinata HOM05D010116 ORTHO05D012794 3.3e-57 226.1 261 58.2
A02p41620 Brassica napus HOM05D010116 ORTHO05D012794 7.4e-57 224.9 236 59.3
BraA02t09104Z Brassica rapa HOM05D010116 ORTHO05D012794 4.9e-53 212.2 236 55.9
C02p61560 Brassica napus HOM05D010116 ORTHO05D012794 1.1e-52 211.1 236 55.5
AL8G38160 Arabidopsis lyrata HOM05D010116 ORTHO05D012794 7.4e-49 198.4 271 50.9
AT5G61470 Arabidopsis thaliana HOM05D010116 ORTHO05D012794 4.2e-44 182.6 305 49.2
BcaC06g33241 Brassica carinata HOM05D010116 ORTHO05D012794 1.4e-42 177.6 250 46.4
Carub.0008s2216 Capsella rubella HOM05D010116 ORTHO05D012794 1.4e-39 167.5 296 46.3
CARHR275240 Cardamine hirsuta HOM05D010116 ORTHO05D012794 1.9e-36 157.1 250 43.2
BcaC03g18086 Brassica carinata HOM05D010116 ORTHO05D012794 1.8e-26 124.0 123 61.0
Gohir.D07G046050 Gossypium hirsutum HOM05D010116 ORTHO05D001708 9.4e-12 75.1 232 27.2
Gorai.001G049200 Gossypium raimondii HOM05D010116 ORTHO05D001708 9.4e-12 75.1 232 27.2
CiPaw.03G020600 Carya illinoinensis HOM05D001867 ORTHO05D001708 6.1e-11 72.4 258 26.7
Gohir.A07G041933 Gossypium hirsutum HOM05D010116 ORTHO05D001708 5.2e-10 69.3 232 26.3
AT3G60580 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 1.5e-09 67.8 259 25.5
HPP92_007425 Vanilla planifolia HOM05D001867 ORTHO05D001708 3.4e-09 66.6 240 28.8
Manes.06G133500 Manihot esculenta HOM05D001867 ORTHO05D001708 5.7e-09 65.9 272 21.3
AL5G42890 Arabidopsis lyrata HOM05D001867 ORTHO05D001708 9.8e-09 65.1 270 24.4
C08p35530 Brassica napus HOM05D001867 ORTHO05D001708 9.8e-09 65.1 239 29.3
Thecc.03G153500 Theobroma cacao HOM05D001867 ORTHO05D001708 9.8e-09 65.1 249 24.9
Aa31LG1G11350 Aethionema arabicum HOM05D001867 ORTHO05D001708 1.7e-08 64.3 237 29.5
COL.COLO4_14101 Corchorus olitorius HOM05D001867 ORTHO05D001708 2.8e-08 63.5 248 30.2
Dinv21642 Davidia involucrata HOM05D001867 ORTHO05D001708 2.8e-08 63.5 244 29.1
PGR042G0355 Punica granatum HOM05D001867 ORTHO05D001708 2.8e-08 63.5 241 26.1
Lj7P537T47 Lonicera japonica HOM05D001867 ORTHO05D001708 3.7e-08 63.2 234 26.1
Potri.001G125900 Populus trichocarpa HOM05D001867 ORTHO05D001708 4.8e-08 62.8 270 25.9
BcaC08g45077 Brassica carinata HOM05D001867 ORTHO05D001708 6.3e-08 62.4 246 27.6
Duzib068G0792 Durio zibethinus HOM05D001867 ORTHO05D001708 6.3e-08 62.4 234 26.1
BcaC07g40579 Brassica carinata HOM05D001867 ORTHO05D001708 8.3e-08 62.0 232 29.3
C04p32080 Brassica napus HOM05D001867 ORTHO05D001708 8.3e-08 62.0 240 27.9
BolC4t24761H Brassica oleracea HOM05D001867 ORTHO05D001708 8.3e-08 62.0 240 27.9
Ciclev10007101m.g Citrus clementina HOM05D001867 ORTHO05D001708 8.3e-08 62.0 230 30.4
Eucgr.K00165 Eucalyptus grandis HOM05D001867 ORTHO05D001708 8.3e-08 62.0 236 23.7
TAR629G0567 Trochodendron aralioides HOM05D001867 ORTHO05D001708 8.3e-08 62.0 265 26.4
DCAR_015875 Daucus carota HOM05D001867 ORTHO05D001708 1.1e-07 61.6 252 26.2
A09p52800 Brassica napus HOM05D001867 ORTHO05D001708 1.4e-07 61.2 242 28.5
BcaC02g10160 Brassica carinata HOM05D001867 ORTHO05D001708 1.8e-07 60.8 240 27.5
Carub.0004s2771 Capsella rubella HOM05D001867 ORTHO05D001708 1.8e-07 60.8 246 28.5
BolC8t51145H Brassica oleracea HOM05D001867 ORTHO05D001708 2.4e-07 60.5 239 28.9
CARHR170970 Cardamine hirsuta HOM05D001867 ORTHO05D001708 2.4e-07 60.5 233 27.9
QL09p005291 Quercus lobata HOM05D001867 ORTHO05D001708 3.1e-07 60.1 241 26.1
Thhalv10009894m.g Eutrema salsugineum HOM05D001867 ORTHO05D001708 4.1e-07 59.7 227 29.5
Hma1.2p1_0316F.1_g123130 Hydrangea macrophylla HOM05D001867 ORTHO05D001708 4.1e-07 59.7 244 26.2
Lalb_Chr13g0302941 Lupinus albus HOM05D001658 ORTHO05D001406 4.1e-07 59.7 240 26.7
Nitab4.5_0002881g0100 Nicotiana tabacum HOM05D001658 ORTHO05D001406 4.1e-07 59.7 262 27.1
Sabra14G0046200 Salix brachista HOM05D000174 ORTHO05D001526 4.1e-07 59.7 245 29.0
C06p26860 Brassica napus HOM05D001867 ORTHO05D001708 5.4e-07 59.3 244 26.6
BolC6t37860H Brassica oleracea HOM05D001867 ORTHO05D001708 5.4e-07 59.3 244 26.6
BraA09t40712Z Brassica rapa HOM05D001867 ORTHO05D001708 5.4e-07 59.3 242 28.5
BcaB02g07404 Brassica carinata HOM05D001867 ORTHO05D001708 7.0e-07 58.9 223 27.4
BcaC02g10161 Brassica carinata HOM05D001867 ORTHO05D001708 7.0e-07 58.9 242 26.0
AT1G02030 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 9.1e-07 58.5 228 27.6
Solyc06g060740.3 Solanum lycopersicum HOM05D001867 ORTHO05D001708 9.1e-07 58.5 241 25.3
Sopen06g020860 Solanum pennellii HOM05D001867 ORTHO05D001708 1.2e-06 58.2 241 25.3
Sabra01G0096900 Salix brachista HOM05D001867 ORTHO05D001708 1.6e-06 57.8 260 25.4
CARHR000340 Cardamine hirsuta HOM05D001867 ORTHO05D001708 2.0e-06 57.4 232 27.2
MD07G1252200 Malus domestica HOM05D001867 ORTHO05D001708 2.0e-06 57.4 248 25.4
Solyc01g090840.3 Solanum lycopersicum HOM05D001867 ORTHO05D001708 2.0e-06 57.4 231 25.5
Nitab4.5_0000618g0040 Nicotiana tabacum HOM05D001867 ORTHO05D001708 2.7e-06 57.0 246 25.6
CSS0027051 Camellia sinensis var. sinensis HOM05D001867 ORTHO05D001708 3.5e-06 56.6 240 27.1
Sp5g02650 Schrenkiella parvula HOM05D001867 ORTHO05D001708 3.5e-06 56.6 239 25.5
Eucgr.A02901 Eucalyptus grandis HOM05D001867 ORTHO05D001708 4.5e-06 56.2 245 27.8
A07p25170 Brassica napus HOM05D001867 ORTHO05D001708 7.7e-06 55.5 238 28.2
BraA07t30159Z Brassica rapa HOM05D001867 ORTHO05D001708 7.7e-06 55.5 238 28.2
Cpa.g.sc111.55 Carica papaya HOM05D001867 ORTHO05D001708 7.7e-06 55.5 242 28.1
Manes.14G036900 Manihot esculenta HOM05D001867 ORTHO05D001708 7.7e-06 55.5 264 22.0
PGSC0003DMG400011873 Solanum tuberosum HOM05D001867 ORTHO05D001708 7.7e-06 55.5 233 24.0


User provided reference genes

Program Settings