Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.5e-306 1055.4 563 100.0
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 5.7e-282 973.8 563 94.0
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 2.1e-276 955.3 578 91.2
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 3.7e-265 917.9 583 88.9
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 2.5e-253 878.6 578 86.5
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 2.1e-212 742.7 613 73.6
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 5.1e-206 721.5 610 72.0
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.3e-204 716.8 610 72.1
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 2.7e-199 699.1 611 69.7
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 3.3e-197 692.2 614 69.7
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 7.7e-162 574.7 607 60.8
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.3e-132 477.6 658 50.0
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 2.4e-115 420.2 611 49.4
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.2e-114 417.9 614 52.6
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 3.1e-110 403.3 605 50.4
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.5e-109 401.0 589 52.5
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.6e-109 400.2 626 49.8
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 3.4e-109 399.8 605 49.4
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 5.4e-107 392.5 610 48.5
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.8e-103 380.2 615 48.8
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 1.7e-100 370.9 592 48.0
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 3.0e-97 360.1 598 48.3
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 1.5e-96 357.8 594 47.5
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 7.4e-96 355.5 598 48.2
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.5e-77 294.7 689 36.9
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 2.7e-74 283.9 716 36.2
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 2.7e-74 283.9 729 35.7
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 1.3e-71 275.0 368 56.0
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 4.1e-70 270.0 694 34.4
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 5.9e-69 266.2 703 36.1
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 3.8e-68 263.5 715 35.4
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 8.5e-68 262.3 701 35.0
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 4.2e-67 260.0 718 33.7
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 1.8e-65 254.6 713 33.5
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 4.0e-65 253.4 710 34.5
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 3.7e-63 246.9 718 34.1
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 6.3e-63 246.1 716 33.7
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 6.3e-63 246.1 694 33.9
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 3.1e-62 243.8 718 34.1
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 4.1e-62 243.4 716 33.5
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 5.3e-62 243.0 667 34.3
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 7.0e-62 242.7 679 35.1
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 2.0e-61 241.1 674 33.8
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 3.8e-60 236.9 730 32.7
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 6.5e-60 236.1 728 31.7
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 6.5e-60 236.1 718 33.7
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 6.5e-60 236.1 705 34.0
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.1e-59 235.3 665 32.5
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.1e-59 235.3 692 32.4
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 5.5e-59 233.0 705 32.3
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.6e-58 231.5 697 33.9
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.6e-58 231.5 670 32.7
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.1e-58 231.1 676 31.5
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.6e-58 230.3 687 32.9
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 4.7e-58 229.9 687 32.8
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 6.1e-58 229.6 671 32.6
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.8e-57 228.0 701 32.8
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.2e-56 225.3 707 30.6
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 3.4e-56 223.8 682 32.8
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 9.8e-56 222.2 749 31.4
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 9.8e-56 222.2 682 32.7
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.3e-55 221.9 687 32.2
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 2.2e-55 221.1 672 31.4
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 2.2e-55 221.1 613 34.7
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.2e-55 221.1 695 31.5
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 3.7e-55 220.3 736 32.7
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 6.3e-55 219.5 690 31.7
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.1e-54 218.8 637 33.9
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 5.4e-54 216.5 664 32.7
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 1.6e-53 214.9 718 33.0
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 3.5e-53 213.8 682 31.5
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 5.9e-53 213.0 730 32.5
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 1.0e-52 212.2 701 32.1
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.7e-52 211.5 660 31.5
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 1.7e-52 211.5 260 57.7
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 2.9e-52 210.7 660 31.4
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 3.8e-52 210.3 622 33.3
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.1e-51 208.8 698 30.9
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 1.5e-51 208.4 700 32.3
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 3.2e-51 207.2 682 31.1
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 5.5e-51 206.5 712 29.2
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 7.2e-51 206.1 712 29.4
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 2.1e-50 204.5 578 32.0
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 4.7e-50 203.4 696 30.5
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 1.0e-49 202.2 537 34.6
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 1.0e-49 202.2 708 29.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.0e-49 200.7 681 30.7
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 4.0e-49 200.3 709 29.8
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 5.2e-49 199.9 835 29.6
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.5e-48 198.4 658 31.8
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 4.4e-48 196.8 698 30.7
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 3.7e-47 193.7 572 32.9
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 6.3e-47 193.0 542 32.1
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 8.3e-47 192.6 700 30.3
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 8.3e-47 192.6 645 32.9
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.4e-46 191.8 681 30.0
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.4e-46 191.8 687 31.0
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 5.4e-46 189.9 691 30.5
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 9.1e-46 189.1 702 29.8
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.2e-45 188.7 690 30.4
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.2e-45 188.7 539 32.5
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.6e-45 188.3 663 29.9
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 2.7e-45 187.6 691 30.1
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 5.9e-45 186.4 555 31.5
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 1.3e-44 185.3 556 30.9
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.7e-44 184.9 678 29.2
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 2.9e-44 184.1 555 31.7
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.3e-43 180.6 721 29.5
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 4.2e-43 180.3 683 28.3
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 5.6e-43 179.9 622 31.4
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 9.5e-43 179.1 673 29.7
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.6e-42 178.3 598 30.3
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 2.8e-42 177.6 605 30.4
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 8.0e-42 176.0 534 31.8
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.4e-41 175.3 506 34.4
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 2.3e-41 174.5 705 28.5
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 1.2e-40 172.2 691 27.4
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 3.4e-40 170.6 679 28.4
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 7.5e-40 169.5 647 30.6
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 9.8e-40 169.1 713 28.5
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 9.8e-40 169.1 714 28.6
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 1.7e-39 168.3 469 34.8
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.9e-39 166.8 563 30.9
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.2e-37 162.2 716 28.4
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 8.6e-36 156.0 667 28.0
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 1.5e-35 155.2 663 26.7
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.1e-34 151.4 747 27.0
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.8e-34 151.0 708 27.1
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 4.7e-34 150.2 515 30.9
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 4.7e-34 150.2 513 30.6
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 5.2e-33 146.7 751 26.8
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 4.4e-32 143.7 565 30.4
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 7.5e-32 142.9 615 29.3
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 3.2e-30 137.5 397 32.2
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 9.2e-30 136.0 510 29.4
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.2e-29 135.6 692 26.4
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.6e-29 135.2 390 33.6
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 3.5e-29 134.0 379 34.3
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 1.0e-28 132.5 504 29.0
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 2.3e-28 131.3 516 29.3
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 3.9e-28 130.6 232 40.9
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.5e-27 127.9 525 28.0
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 7.3e-27 126.3 533 28.7
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.1e-26 124.8 483 28.8
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 3.6e-26 124.0 365 32.9
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 4.7e-26 123.6 491 28.1
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.1e-25 122.5 482 29.5
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 1.1e-25 122.5 438 31.1
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 4.0e-25 120.6 478 30.3
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 4.0e-25 120.6 521 27.8
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.2e-23 114.8 474 29.5
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 1.9e-22 111.7 248 37.1
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 7.1e-22 109.8 411 28.7
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.6e-21 108.6 466 28.1
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 2.1e-21 108.2 662 26.6
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 2.7e-21 107.8 499 27.7
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 4.6e-21 107.1 227 40.1
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.9e-19 101.7 601 27.5
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 9.5e-19 99.4 323 29.7
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 9.5e-19 99.4 377 30.5
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.7e-18 97.1 254 35.0
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 1.4e-17 95.5 506 25.7
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 1.8e-17 95.1 258 36.0
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 9.9e-16 89.4 232 36.6
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 1.3e-15 89.0 314 33.1
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.3e-15 89.0 282 31.9
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 1.7e-15 88.6 425 26.8
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 1.7e-15 88.6 496 26.8
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.7e-15 88.6 537 25.5
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 2.2e-15 88.2 416 28.4
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 1.4e-14 85.5 493 27.6
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 1.4e-14 85.5 438 25.6
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 9.2e-14 82.8 232 33.6
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.5e-13 80.9 190 39.5
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 3.9e-12 77.4 444 25.5
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 6.6e-12 76.6 246 30.1
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.5e-11 74.7 305 30.8
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 9.6e-11 72.8 336 27.1
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 9.6e-11 72.8 385 26.8
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.2e-10 72.4 363 26.2
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 4.7e-10 70.5 434 26.0
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 3.1e-09 67.8 406 24.1
BcaB07g34223 Brassica carinata HOM05D003672 ORTHO05D004121 5.2e-09 67.0 65 63.1
C06p31970 Brassica napus HOM05D023672 ORTHO05D024296 8.4e-07 59.7 76 46.1
BolC6t38324H Brassica oleracea HOM05D023672 ORTHO05D024296 8.4e-07 59.7 76 46.1


User provided reference genes

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