Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 6.2e-71 271.9 327 100.0
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 5.8e-69 265.4 327 98.8
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.8e-68 262.7 327 98.5
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.8e-68 262.7 327 98.5
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.4e-67 260.8 327 97.9
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.5e-67 260.0 327 97.2
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.6e-66 257.3 327 96.9
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.7e-66 256.5 327 96.3
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.7e-66 256.5 326 97.2
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 3.5e-66 256.1 327 97.2
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 6.0e-66 255.4 327 96.6
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 6.0e-66 255.4 336 84.5
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 7.9e-66 255.0 327 96.9
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.3e-65 254.2 326 97.2
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 5.1e-65 252.3 343 81.6
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.1e-63 246.9 331 95.5
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 6.2e-63 245.4 327 95.4
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 9.0e-62 241.5 345 78.8
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.4e-59 234.2 327 91.7
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 6.7e-57 225.3 327 90.8
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 5.7e-56 222.2 327 90.8
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 5.7e-56 222.2 327 88.1
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 7.4e-56 221.9 327 90.2
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.7e-55 219.5 327 89.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.7e-55 219.5 318 91.5
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-54 217.6 321 88.8
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.8e-54 217.2 323 87.3
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-54 216.5 327 89.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.1e-54 216.5 329 89.1
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 6.9e-54 215.3 316 91.8
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.5e-53 214.2 327 88.7
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.0e-53 213.8 318 90.9
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.4e-53 213.0 327 87.8
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.4e-53 213.0 321 92.8
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 5.9e-53 212.2 328 90.2
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 5.9e-53 212.2 318 90.9
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 5.9e-53 212.2 318 89.6
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 5.9e-53 212.2 323 91.0
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 7.7e-53 211.8 320 92.2
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 7.7e-53 211.8 307 94.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 7.7e-53 211.8 307 94.8
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.0e-52 211.5 318 89.9
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.3e-52 211.1 328 89.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-52 211.1 316 91.8
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.3e-52 211.1 321 87.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-52 210.7 327 89.9
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.2e-52 210.3 327 89.9
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.2e-52 210.3 328 89.6
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-52 210.3 327 89.6
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.9e-52 209.9 318 90.6
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.9e-52 209.9 315 87.6
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 3.8e-52 209.5 318 91.5
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.8e-52 209.5 327 87.8
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 3.8e-52 209.5 316 89.9
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 5.0e-52 209.1 321 91.3
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 5.0e-52 209.1 318 91.5
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 5.0e-52 209.1 309 93.2
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 5.0e-52 209.1 311 92.6
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 6.5e-52 208.8 318 91.8
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.5e-52 208.8 324 88.0
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 8.5e-52 208.4 309 93.2
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 8.5e-52 208.4 318 89.9
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-51 208.0 326 89.6
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.1e-51 208.0 318 91.2
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.9e-51 207.2 316 91.1
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 2.5e-51 206.8 328 89.6
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 2.5e-51 206.8 328 89.6
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 3.2e-51 206.5 321 87.9
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 3.2e-51 206.5 327 88.1
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 3.2e-51 206.5 327 88.1
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 3.2e-51 206.5 306 93.1
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 5.5e-51 205.7 321 90.7
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 7.2e-51 205.3 314 90.4
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 7.2e-51 205.3 331 88.5
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 7.2e-51 205.3 310 92.3
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 9.4e-51 204.9 321 90.7
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 9.4e-51 204.9 322 90.7
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.2e-50 204.5 324 89.2
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.6e-50 204.1 318 91.2
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.6e-50 204.1 321 90.7
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.6e-50 204.1 324 80.9
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.1e-50 203.8 329 88.4
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.7e-50 203.4 322 90.4
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.7e-50 203.4 322 90.4
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 3.6e-50 203.0 321 88.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 6.1e-50 202.2 340 79.4
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 7.9e-50 201.8 317 89.9
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.0e-49 201.4 324 87.0
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.8e-49 200.7 311 91.6
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.3e-49 200.3 321 76.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.3e-49 200.3 318 90.3
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 3.0e-49 199.9 318 89.6
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 3.0e-49 199.9 309 91.6
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 3.9e-49 199.5 332 87.7
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 6.7e-49 198.7 319 90.0
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 6.7e-49 198.7 319 89.7
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 8.8e-49 198.4 325 87.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.5e-48 197.6 321 90.0
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.5e-48 196.8 315 89.2
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 5.7e-48 195.7 341 61.0
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 5.7e-48 195.7 318 88.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.3e-47 194.5 319 81.2
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.7e-47 193.0 319 88.7
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 6.3e-47 192.2 308 90.6
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.1e-46 191.4 296 92.9
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.1e-46 191.4 238 89.9
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.4e-46 191.0 304 91.8
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.4e-46 191.0 241 88.4
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.8e-46 190.7 304 91.8
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.4e-46 190.3 241 87.1
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 3.1e-46 189.9 370 65.4
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-46 189.9 329 79.6
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-46 189.9 329 79.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.1e-46 188.3 348 63.8
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.5e-45 187.6 296 90.9
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.9e-44 183.3 316 87.7
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.1e-43 181.4 326 83.4
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 4.2e-43 179.5 101 85.1
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.2e-43 178.7 320 84.1
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.2e-42 177.9 323 85.1
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.2e-42 177.9 327 53.2
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.6e-42 177.6 315 87.3
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.6e-42 176.4 319 84.0
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.6e-42 176.4 319 84.0
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 6.1e-42 175.6 241 69.3
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.9e-41 172.9 340 82.9
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 6.7e-41 172.2 325 83.7
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 8.8e-41 171.8 330 84.8
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-40 171.4 101 82.2
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.3e-40 169.9 105 80.0
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.4e-40 169.5 331 83.7
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 4.4e-40 169.5 331 84.0
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.4e-40 169.5 91 89.0
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.4e-40 169.5 91 89.0
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 4.4e-40 169.5 101 80.2
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.7e-40 169.1 104 80.8
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 7.4e-40 168.7 310 73.9
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 7.4e-40 168.7 93 89.2
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.4e-40 168.7 340 74.7
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.2e-39 167.2 104 79.8
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 6.3e-39 165.6 319 83.7
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.3e-39 165.6 314 70.4
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 6.3e-39 165.6 92 85.9
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 6.3e-39 165.6 92 85.9
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.1e-38 164.9 343 79.0
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.8e-38 164.1 92 83.7
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.2e-37 161.4 321 81.3
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.0e-37 160.6 221 91.0
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 3.5e-37 159.8 102 78.4
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 4.5e-37 159.5 95 80.0
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.0e-36 158.3 321 80.4
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.0e-36 156.0 321 81.9
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 8.5e-36 155.2 321 79.8
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.0e-33 148.3 241 80.1
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.8e-31 140.2 73 89.0
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 4.1e-30 136.3 244 77.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.5e-28 129.0 94 61.7
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 8.5e-28 128.6 303 79.5
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 5.2e-25 119.4 324 75.0
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.6e-24 117.1 66 81.8
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.1e-22 109.8 275 79.3
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-19 101.3 73 68.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.5e-19 99.4 65 73.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-17 95.1 50 82.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.8e-17 94.4 64 64.1
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.3e-17 94.0 100 57.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 2.0e-16 90.9 100 55.0
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 3.4e-16 90.1 64 62.5
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.0e-14 82.4 117 87.2
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.0e-13 80.9 64 59.4
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 5.9e-13 79.3 50 74.0
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-12 78.2 48 81.2
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.7e-12 77.8 45 86.7
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.9e-12 77.0 178 88.8
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 2.1e-10 70.9 250 66.4
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.8e-10 70.5 117 47.9
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 3.0e-09 67.0 40 77.5
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.6e-08 63.9 40 77.5
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.2e-07 60.8 40 75.0
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-07 60.8 40 72.5


User provided reference genes

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