Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33164 Brassica carinata HOM05D002953 ORTHO05D003249 2.6e-111 405.6 236 100.0
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 3.8e-94 348.6 233 82.4
C07p44950 Brassica napus HOM05D000627 ORTHO05D000365 8.2e-89 330.9 222 91.0
BolC7t45018H Brassica oleracea HOM05D000627 ORTHO05D000365 8.2e-89 330.9 222 91.0
BraA03t13810Z Brassica rapa HOM05D000627 ORTHO05D000365 5.0e-86 321.6 222 89.2
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 5.1e-83 311.6 234 72.2
Thhalv10004785m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 6.9e-80 301.2 234 76.9
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 6.5e-78 294.7 234 68.8
A03p46900 Brassica napus HOM05D000627 ORTHO05D000365 6.1e-76 288.1 233 80.3
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 1.0e-75 287.3 234 67.9
BcaC06g33224 Brassica carinata HOM05D002953 ORTHO05D000365 3.9e-75 285.4 206 80.1
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.0e-70 270.8 234 65.0
Carub.0008s2196 Capsella rubella HOM05D002953 ORTHO05D003249 2.8e-65 252.7 234 70.9
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 1.8e-43 180.3 241 44.8
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 7.8e-23 111.7 234 34.6
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 2.3e-22 110.2 220 36.4
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 3.0e-22 109.8 238 33.6
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 6.6e-22 108.6 217 36.9
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 1.2e-20 104.4 236 32.6
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 2.1e-20 103.6 215 32.6
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 4.7e-20 102.4 222 33.8
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 6.2e-20 102.1 233 31.8
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 1.4e-19 100.9 243 31.3
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.4e-19 100.9 256 31.6
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 1.4e-19 100.9 229 31.9
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 1.4e-19 100.9 236 32.6
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 1.4e-19 100.9 223 32.3
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 2.3e-19 100.1 232 33.2
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 6.8e-19 98.6 223 31.8
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 4.4e-18 95.9 210 38.1
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 5.8e-18 95.5 221 41.2
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 2.2e-17 93.6 229 29.3
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 6.4e-17 92.0 224 32.1
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 1.9e-16 90.5 221 29.9
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 1.9e-16 90.5 229 33.2
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 3.2e-16 89.7 229 31.0
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 4.1e-16 89.4 221 30.3
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 9.2e-16 88.2 221 31.7
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 9.2e-16 88.2 209 33.5
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.2e-15 87.8 227 33.0
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.6e-15 87.4 232 30.6
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.1e-15 87.0 232 28.9
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 2.1e-15 87.0 228 30.7
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 2.7e-15 86.7 226 32.7
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 2.7e-15 86.7 216 32.4
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 2.7e-15 86.7 238 29.8
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 6.0e-15 85.5 213 32.4
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 1.0e-14 84.7 214 30.4
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.3e-14 84.3 232 28.4
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.3e-14 84.3 228 31.6
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.3e-14 83.6 232 29.3
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 2.3e-14 83.6 220 31.8
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 3.0e-14 83.2 214 31.3
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 5.1e-14 82.4 213 32.4
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 5.1e-14 82.4 214 31.8
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 6.6e-14 82.0 221 29.4
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 8.6e-14 81.6 250 27.6
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 1.1e-13 81.3 228 30.7
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 1.5e-13 80.9 218 28.9
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 2.5e-13 80.1 223 30.0
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 4.3e-13 79.3 233 30.9
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 5.6e-13 79.0 263 27.4
FAN18G4303 Fragaria x ananassa HOM05D000627 ORTHO05D000365 7.3e-13 78.6 217 30.4
FAN13G1454 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.2e-12 77.8 213 30.5
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.2e-12 77.8 232 28.9
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 1.6e-12 77.4 214 30.8
Sc10g0009790 Simmondsia chinensis HOM05D002953 ORTHO05D003249 1.6e-12 77.4 218 30.3
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 2.1e-12 77.0 280 26.8
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 2.1e-12 77.0 212 30.2
Lalb_Chr13g0302991 Lupinus albus HOM05D002953 ORTHO05D003249 4.7e-12 75.9 236 29.7
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 4.7e-12 75.9 225 30.7
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.1e-11 74.7 229 27.1
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 1.1e-11 74.7 129 49.6
Rhsim12G0152800 Rhododendron simsii HOM05D002953 ORTHO05D003249 1.1e-11 74.7 218 30.7
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 1.8e-11 73.9 222 28.8
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 2.3e-11 73.6 213 30.0
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 4.0e-11 72.8 218 29.8
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 5.2e-11 72.4 109 41.3
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 5.2e-11 72.4 216 30.6
Rhsim12G0152900 Rhododendron simsii HOM05D002953 ORTHO05D003249 6.8e-11 72.0 218 30.3
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 4.4e-10 69.3 110 33.6
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 4.4e-10 69.3 131 35.1
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 5.8e-10 68.9 288 27.8
ECA232G4309 Erigeron canadensis HOM05D002953 ORTHO05D003249 9.9e-10 68.2 212 28.8
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 1.3e-09 67.8 239 27.6
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.3e-09 67.8 105 38.1
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 4.9e-09 65.9 118 41.5
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 6.4e-09 65.5 274 25.9
PSO017G2547 Papaver somniferum HOM05D002953 ORTHO05D003249 8.4e-09 65.1 118 46.6
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.1e-08 64.7 284 24.3
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.4e-08 64.3 218 29.8
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 1.9e-08 63.9 257 29.6
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 2.4e-08 63.5 107 44.9
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 2.4e-08 63.5 113 43.4
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 4.1e-08 62.8 123 31.7
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 4.1e-08 62.8 127 32.3
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 5.4e-08 62.4 107 33.6
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 7.1e-08 62.0 143 31.5
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 9.2e-08 61.6 107 31.8
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 9.2e-08 61.6 265 24.9
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.2e-07 61.2 108 34.3
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 2.7e-07 60.1 273 25.3
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 2.7e-07 60.1 114 32.5
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 3.5e-07 59.7 119 31.9
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 4.6e-07 59.3 131 35.1
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.6e-07 59.3 116 32.8
SalBow2G1905 Salvia bowleyana HOM05D002953 ORTHO05D003249 7.8e-07 58.5 107 51.4
SalBow2G2783 Salvia bowleyana HOM05D002953 ORTHO05D003249 7.8e-07 58.5 107 51.4
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 7.8e-07 58.5 271 22.5
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 1.0e-06 58.2 107 31.8
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 1.0e-06 58.2 104 30.8
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 1.3e-06 57.8 244 26.2
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.7e-06 57.4 105 32.4
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 1.7e-06 57.4 129 31.8
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 1.7e-06 57.4 119 42.0
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 2.3e-06 57.0 270 26.7
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 2.3e-06 57.0 117 31.6
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 2.3e-06 57.0 105 31.4
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 2.3e-06 57.0 120 33.3
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 3.9e-06 56.2 109 30.3
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 6.6e-06 55.5 243 24.7
Glyma.05G023400 Glycine max HOM05D002953 ORTHO05D003249 6.6e-06 55.5 242 26.9
Glyma.17G076300 Glycine max HOM05D002953 ORTHO05D003249 8.6e-06 55.1 252 27.0
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 8.6e-06 55.1 136 27.2


User provided reference genes

Program Settings