Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-153 545.8 272 100.0
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 8.7e-143 510.4 258 98.8
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 5.6e-142 507.7 258 98.4
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 7.6e-139 497.3 261 95.0
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.0e-135 485.3 261 92.3
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 5.6e-134 481.1 261 92.3
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.8e-133 478.8 261 91.6
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 3.6e-133 478.4 261 91.6
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.4e-132 476.5 261 91.6
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 1.5e-131 473.0 261 90.8
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.0e-131 472.6 260 88.8
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.1e-127 458.0 258 88.8
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.5e-126 456.4 261 87.0
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.5e-126 456.4 261 87.4
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 9.6e-126 453.8 261 86.6
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 9.0e-124 447.2 260 85.4
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.5e-123 446.4 257 87.9
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 1.5e-123 446.4 257 87.9
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 4.5e-123 444.9 262 84.0
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.7e-122 443.0 262 84.7
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.2e-122 442.6 261 82.4
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 2.2e-122 442.6 262 83.6
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 2.2e-122 442.6 262 84.4
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 4.9e-122 441.4 262 83.6
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 6.5e-122 441.0 263 82.9
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 6.5e-122 441.0 262 84.0
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 8.4e-122 440.7 260 84.2
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 1.1e-121 440.3 258 83.3
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 1.1e-121 440.3 258 83.3
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.4e-121 439.9 260 83.5
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.4e-121 439.9 262 83.6
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-121 439.5 262 85.1
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.9e-121 439.5 258 82.9
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.5e-121 439.1 262 83.6
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 2.5e-121 439.1 262 85.5
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.2e-121 438.7 262 84.4
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 4.2e-121 438.3 261 82.8
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 4.2e-121 438.3 258 82.9
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 5.5e-121 438.0 261 83.9
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 5.5e-121 438.0 262 83.2
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 5.5e-121 438.0 260 83.8
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 7.1e-121 437.6 262 84.0
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 9.3e-121 437.2 261 82.4
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 9.3e-121 437.2 262 83.6
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.2e-120 436.8 259 82.6
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.2e-120 436.8 261 82.8
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 2.1e-120 436.0 262 83.6
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.1e-120 436.0 263 83.3
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.7e-120 435.6 262 82.8
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.5e-120 435.3 261 82.4
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 3.5e-120 435.3 261 82.4
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.5e-120 435.3 260 82.3
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 6.0e-120 434.5 262 81.7
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.0e-119 433.7 262 82.8
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.3e-119 433.3 263 82.1
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.8e-119 433.0 262 83.2
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.8e-119 433.0 258 82.6
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.3e-119 432.6 261 81.6
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 3.0e-119 432.2 262 83.2
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 3.9e-119 431.8 256 83.2
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 5.1e-119 431.4 262 80.9
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.1e-119 431.4 262 84.0
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 5.1e-119 431.4 258 81.8
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.1e-118 430.3 264 82.6
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.5e-118 429.9 261 81.6
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.5e-118 429.9 262 81.3
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 2.5e-118 429.1 259 81.5
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 2.5e-118 429.1 262 80.9
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 5.7e-118 427.9 261 80.1
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 5.7e-118 427.9 261 80.1
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 5.7e-118 427.9 262 79.8
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 2.8e-117 425.6 260 81.5
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 3.7e-117 425.2 260 80.4
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 3.7e-117 425.2 262 80.9
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 6.3e-117 424.5 261 79.7
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 6.3e-117 424.5 261 79.7
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.3e-117 424.5 261 79.3
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 1.4e-116 423.3 258 81.4
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 1.8e-116 422.9 260 81.2
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.8e-116 422.9 260 81.2
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.4e-116 422.5 260 81.2
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 2.4e-116 422.5 257 80.5
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.1e-116 422.2 260 80.8
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.1e-116 422.2 260 81.2
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.1e-116 422.2 260 81.2
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.3e-116 421.4 260 80.8
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.3e-116 421.4 260 80.8
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 5.3e-116 421.4 285 76.1
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 5.3e-116 421.4 257 79.4
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 6.9e-116 421.0 261 82.4
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 6.9e-116 421.0 261 79.7
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 9.0e-116 420.6 261 79.3
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 9.0e-116 420.6 261 79.7
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 9.0e-116 420.6 261 80.5
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.2e-115 420.2 277 78.3
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.5e-115 419.9 260 79.6
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 3.4e-115 418.7 262 79.8
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 3.4e-115 418.7 261 80.1
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.0e-114 417.2 262 77.5
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.0e-114 417.2 262 80.5
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 3.8e-114 415.2 261 78.9
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 5.0e-114 414.8 262 76.3
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 6.5e-114 414.5 252 81.0
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 6.5e-114 414.5 267 77.5
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.1e-113 413.7 261 82.0
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 3.2e-113 412.1 256 80.1
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.2e-113 412.1 257 81.3
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 3.2e-113 412.1 262 79.4
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.5e-113 411.4 267 77.5
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 7.2e-113 411.0 260 80.0
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.7e-112 409.1 266 75.9
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 3.5e-112 408.7 262 76.7
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 1.3e-111 406.8 268 77.2
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 2.3e-111 406.0 330 66.7
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 2.5e-110 402.5 252 79.4
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 9.7e-110 400.6 259 80.7
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.2e-109 399.4 256 78.9
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.4e-108 396.7 258 75.2
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 1.3e-106 390.2 262 73.3
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 2.7e-104 382.5 234 79.5
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 8.8e-103 377.5 258 75.2
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 7.4e-102 374.4 234 80.3
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 9.7e-102 374.0 255 71.4
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 6.3e-101 371.3 232 78.4
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 8.2e-101 370.9 235 78.3
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 2.9e-98 362.5 260 70.8
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 3.8e-98 362.1 261 70.1
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 3.8e-98 362.1 230 78.3
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 8.5e-98 360.9 409 50.4
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 4.2e-97 358.6 277 69.0
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.8e-95 350.9 229 78.2
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 5.0e-90 335.1 258 67.1
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.5e-89 333.6 214 76.6
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 5.9e-83 311.6 229 67.7
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.2e-80 303.9 188 77.1
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 8.0e-80 301.2 252 60.7
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 1.6e-72 276.9 159 84.9
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.1e-60 237.7 181 69.1
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.2e-60 236.1 186 62.9
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 5.9e-59 231.9 152 73.0
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 5.9e-59 231.9 152 73.0
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 4.7e-56 222.2 106 98.1
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 3.1e-55 219.5 258 48.4
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 8.3e-53 211.5 188 59.0
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 3.2e-52 209.5 263 47.1
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 1.0e-50 204.5 251 48.6
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 2.1e-48 196.8 169 65.1
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 8.3e-45 184.9 221 50.2
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 1.1e-44 184.5 251 44.2
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.9e-44 183.7 103 83.5
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 2.1e-43 180.3 250 40.8
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 9.5e-41 171.4 258 44.2
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.1e-40 168.3 119 70.6
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.1e-39 167.9 123 69.9
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.8e-37 159.5 146 59.6
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.2e-35 154.5 139 59.0
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 3.9e-34 149.4 113 75.2
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.4e-31 141.0 180 47.8
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 3.5e-27 126.3 92 65.2
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 1.6e-24 117.5 235 32.8
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.1e-24 117.1 63 81.0
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.0e-23 112.8 117 56.4
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-20 104.4 59 81.4
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 7.9e-19 98.6 117 43.6
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 1.1e-17 94.7 59 74.6
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 4.3e-17 92.8 59 72.9
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 4.3e-17 92.8 59 72.9
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 4.8e-16 89.4 47 85.1
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.8e-15 87.4 52 80.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 1.2e-14 84.7 43 93.0
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.4e-12 77.0 90 55.6
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 8.7e-10 68.6 102 45.1
BcaC09g49081 Brassica carinata HOM05D003935 ORTHO05D091498 4.0e-07 59.7 54 63.0


User provided reference genes

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