Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 4.0e-263 911.0 495 100.0
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.6e-219 764.6 500 89.0
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.8e-218 762.7 500 88.8
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 2.5e-217 758.8 503 88.1
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 8.2e-216 753.8 509 86.8
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 8.2e-216 753.8 509 86.8
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 2.7e-195 685.6 520 79.4
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.2e-185 653.7 515 75.9
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 8.8e-178 627.5 508 70.1
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 2.0e-177 626.3 515 72.8
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.0e-174 616.3 515 72.4
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 5.9e-166 588.2 506 71.1
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.1e-151 540.8 513 67.4
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.1e-135 487.6 537 57.2
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.4e-119 433.3 542 54.2
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.4e-114 417.5 539 48.6
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.4e-114 417.5 539 48.6
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.4e-114 416.8 539 48.8
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 3.4e-113 412.9 540 48.1
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.5e-110 402.9 538 48.3
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 6.0e-110 402.1 541 47.3
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.9e-108 397.1 545 50.5
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.8e-107 393.3 556 46.0
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 6.3e-107 392.1 549 49.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 5.3e-106 389.0 535 51.4
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.9e-106 388.7 551 52.6
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 9.0e-106 388.3 547 45.9
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 9.0e-106 388.3 549 49.0
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 9.0e-106 388.3 540 47.6
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.2e-105 387.9 551 51.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.2e-105 387.9 530 51.7
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.7e-104 384.0 555 47.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 3.8e-104 382.9 546 48.9
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.1e-103 381.3 525 51.8
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 4.2e-103 379.4 543 50.5
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.1e-102 377.1 539 49.4
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.1e-102 377.1 559 47.4
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 6.1e-102 375.6 531 47.3
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.0e-101 374.8 543 47.3
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.4e-101 374.4 533 50.7
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.9e-101 372.9 546 45.1
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.1e-100 371.3 513 46.2
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.7e-100 369.0 521 52.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 9.7e-100 368.2 521 52.2
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 9.7e-100 368.2 531 48.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 2.2e-99 367.1 550 48.5
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 3.7e-99 366.3 549 49.5
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 6.3e-99 365.5 522 47.5
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 6.3e-99 365.5 540 45.7
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.1e-98 364.8 540 48.0
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 4.1e-98 362.8 560 44.3
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 9.1e-98 361.7 597 43.9
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.0e-97 360.5 562 46.4
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 3.4e-97 359.8 542 48.5
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 7.7e-97 358.6 526 45.1
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.0e-96 358.2 556 44.6
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.9e-96 356.7 546 47.4
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.4e-95 354.4 520 47.7
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.9e-95 354.0 542 44.6
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.9e-95 354.0 505 45.1
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.9e-95 354.0 544 46.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 3.2e-95 353.2 547 48.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 4.2e-95 352.8 541 46.6
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 5.5e-95 352.4 547 46.1
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 7.2e-95 352.1 557 46.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 6.1e-94 349.0 533 46.2
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 7.9e-94 348.6 542 44.5
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.0e-93 346.7 546 47.1
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 8.8e-93 345.1 544 43.0
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.1e-92 344.7 544 43.0
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.3e-92 343.2 526 49.2
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 3.3e-92 343.2 552 47.8
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 5.7e-92 342.4 547 46.6
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 5.7e-92 342.4 523 46.7
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 7.4e-92 342.0 514 49.0
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 7.4e-92 342.0 518 48.5
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.8e-91 340.1 529 46.5
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 3.7e-91 339.7 527 47.4
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 3.7e-91 339.7 543 47.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 8.2e-91 338.6 535 46.9
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-90 337.8 529 47.3
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.8e-90 337.4 522 44.1
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.8e-90 337.4 527 43.1
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.1e-90 336.3 529 47.1
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 4.1e-90 336.3 539 43.4
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 9.1e-90 335.1 472 46.2
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 2.6e-89 333.6 567 40.7
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 4.5e-89 332.8 550 46.5
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 5.9e-89 332.4 537 47.7
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 8.5e-88 328.6 534 44.8
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 8.5e-88 328.6 538 45.9
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 7.2e-87 325.5 519 46.6
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 9.4e-87 325.1 557 40.0
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.1e-86 323.9 563 44.2
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 3.6e-86 323.2 501 44.9
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 3.6e-86 323.2 532 47.7
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.3e-85 320.5 617 42.3
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 9.7e-84 315.1 528 45.8
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.7e-83 314.3 545 46.2
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.7e-83 314.3 478 45.0
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.6e-81 307.8 453 46.1
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 6.5e-80 302.4 549 40.6
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.2e-79 300.1 451 45.5
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 5.5e-79 299.3 426 46.5
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 4.4e-76 289.7 501 42.1
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.6e-73 281.2 568 36.1
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.7e-72 277.7 543 40.5
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 5.0e-72 276.2 528 40.5
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 8.5e-72 275.4 547 39.1
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 2.0e-68 264.2 229 61.6
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.0e-68 264.2 506 43.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.0e-68 264.2 506 43.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 4.4e-68 263.1 504 43.8
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.2e-67 260.8 508 41.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.6e-65 254.6 664 32.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.0e-64 251.9 227 59.9
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 7.5e-60 235.7 587 35.1
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 4.5e-57 226.5 349 43.3
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 5.9e-57 226.1 312 46.8
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.3e-56 224.2 587 35.1
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 5.6e-47 193.0 595 31.6
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 8.9e-45 185.7 399 38.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.8e-41 172.6 388 41.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.1e-34 152.1 120 66.7
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.1e-34 150.2 118 66.1
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.2e-33 148.7 233 42.1
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.5e-33 147.1 284 38.7
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 4.6e-33 146.7 254 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 4.3e-31 140.2 471 31.2
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.6e-30 138.3 651 26.6
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 8.1e-30 136.0 416 31.5
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.2e-27 127.9 105 70.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.9e-27 126.7 423 29.6
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.9e-24 117.1 178 43.3
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.7e-24 115.9 199 46.2
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-23 115.5 262 40.5
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.1e-23 115.5 377 30.0
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.6e-22 110.5 233 36.5
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.3e-16 91.3 404 28.0
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.3e-16 91.3 90 53.3
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 8.1e-14 82.8 71 62.0
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.0e-12 78.2 83 49.4
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.5e-12 77.0 128 40.6
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 7.6e-12 76.3 184 31.5
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.7e-11 75.1 213 34.7
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.1e-10 69.7 105 42.9
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 4.6e-09 67.0 358 26.5
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.1e-08 63.5 136 39.7


User provided reference genes

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