Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33088 Brassica carinata HOM05D010645 ORTHO05D000724 2.2e-114 415.6 210 100.0
A03p47840 Brassica napus HOM05D010645 ORTHO05D000724 8.3e-93 344.0 214 83.2
BraA03t13894Z Brassica rapa HOM05D010645 ORTHO05D000724 3.2e-92 342.0 214 83.2
BcaC06g33308 Brassica carinata HOM05D010645 ORTHO05D000724 5.8e-86 321.2 219 79.5
C07p45820 Brassica napus HOM05D010645 ORTHO05D000724 5.8e-86 321.2 219 79.5
BolC7t45103H Brassica oleracea HOM05D010645 ORTHO05D000724 5.8e-86 321.2 219 79.5
Thhalv10010715m.g Eutrema salsugineum HOM05D010645 ORTHO05D000724 1.7e-58 229.9 229 65.5
Sp5g11590 Schrenkiella parvula HOM05D010645 ORTHO05D000724 3.3e-57 225.7 236 59.3
CARHR160140 Cardamine hirsuta HOM05D010645 ORTHO05D000724 4.5e-46 188.7 224 58.0
BcaC06g33311 Brassica carinata HOM05D010645 ORTHO05D000724 3.0e-34 149.4 71 100.0
AL5G30770 Arabidopsis lyrata HOM05D010645 ORTHO05D000724 4.3e-33 145.6 211 50.7
Carub.0005s1695 Capsella rubella HOM05D010645 ORTHO05D000724 6.2e-32 141.7 232 47.0
Aa31LG4G18800 Aethionema arabicum HOM05D010645 ORTHO05D000724 1.4e-31 140.6 229 45.9
THA.LOC104826988 Tarenaya hassleriana HOM05D010645 ORTHO05D000724 9.3e-28 127.9 231 42.9
A09p43650 Brassica napus HOM05D010645 ORTHO05D000724 3.1e-23 112.8 101 61.4
BcaC07g39524 Brassica carinata HOM05D010645 ORTHO05D000724 1.2e-22 110.9 211 42.7
C08p25700 Brassica napus HOM05D010645 ORTHO05D000724 1.5e-22 110.5 102 60.8
AT3G50630 Arabidopsis thaliana HOM05D010645 ORTHO05D000724 3.0e-18 96.3 187 43.9
THA.LOC104821273 Tarenaya hassleriana HOM05D010645 ORTHO05D000724 3.9e-18 95.9 214 39.3
Cpa.g.sc55.167 Carica papaya HOM05D000988 ORTHO05D000724 2.0e-17 93.6 228 38.2
Dinv29977 Davidia involucrata HOM05D000988 ORTHO05D000724 9.7e-17 91.3 199 37.2
GSVIVG01022145001 Vitis vinifera HOM05D000988 ORTHO05D000724 1.4e-15 87.4 217 36.4
RcHm_v2.0_Chr2g0105111 Rosa chinensis HOM05D000988 ORTHO05D000724 2.4e-15 86.7 164 40.2
FAN23G0955 Fragaria x ananassa HOM05D000988 ORTHO05D000724 4.1e-15 85.9 215 32.6
Dinv39865 Davidia involucrata HOM05D000988 ORTHO05D000724 1.2e-14 84.3 220 37.7
FAN26G1516 Fragaria x ananassa HOM05D000988 ORTHO05D000724 1.5e-14 84.0 216 33.8
FvH4_1g15820 Fragaria vesca HOM05D000988 ORTHO05D000724 2.0e-14 83.6 215 32.1
FAN28G2662 Fragaria x ananassa HOM05D000988 ORTHO05D000724 5.9e-14 82.0 215 33.0
Glyma.17G175700 Glycine max HOM05D000988 ORTHO05D000724 7.7e-14 81.6 136 42.6
FAN19G1762 Fragaria x ananassa HOM05D000988 ORTHO05D000724 1.0e-13 81.3 215 32.1
QL06p041825 Quercus lobata HOM05D000988 ORTHO05D000724 1.3e-13 80.9 141 39.0
Gohir.A11G191100 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.9e-13 79.7 205 39.0
Gorai.007G211800 Gossypium raimondii HOM05D000988 ORTHO05D000724 1.4e-12 77.4 201 37.8
CSS0048797 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 1.9e-12 77.0 223 34.1
Duzib147G1455 Durio zibethinus HOM05D000988 ORTHO05D000724 1.9e-12 77.0 222 36.5
CSS0047121 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 2.5e-12 76.6 216 33.8
arahy.Tifrunner.gnm1.ann1.C2Y005 Arachis hypogaea HOM05D000988 ORTHO05D000724 3.2e-12 76.3 141 39.0
Phvul.002G019500 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 4.2e-12 75.9 214 33.6
Phvul.003G244700 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 4.2e-12 75.9 210 36.2
Prupe.7G135000 Prunus persica HOM05D000988 ORTHO05D000724 5.5e-12 75.5 204 36.3
Thecc.01G054100 Theobroma cacao HOM05D000988 ORTHO05D000724 9.4e-12 74.7 141 41.1
Glyma.11G056700 Glycine max HOM05D000988 ORTHO05D000724 1.6e-11 73.9 146 39.0
Gohir.D11G197900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.6e-11 72.8 202 37.6
Medtr5g017600 Medicago truncatula HOM05D000988 ORTHO05D000724 3.6e-11 72.8 127 42.5
Actinidia36500 Actinidia chinensis HOM05D000988 ORTHO05D000724 4.7e-11 72.4 220 34.5
TWI73G0652 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 4.7e-11 72.4 221 33.5
Potri.007G042300 Populus trichocarpa HOM05D000988 ORTHO05D000724 6.1e-11 72.0 201 32.8
Psat2g166040 Pisum sativum HOM05D000988 ORTHO05D000724 7.9e-11 71.6 214 35.0
Glyma.01G185400 Glycine max HOM05D000988 ORTHO05D000724 1.0e-10 71.2 221 33.9
Gohir.A12G070500 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.0e-10 71.2 133 39.8
Manes.13G127100 Manihot esculenta HOM05D000988 ORTHO05D000724 1.0e-10 71.2 148 38.5
Ciclev10026517m.g Citrus clementina HOM05D000988 ORTHO05D000724 1.4e-10 70.9 193 34.7
Eucgr.H02008 Eucalyptus grandis HOM05D000988 ORTHO05D000724 1.4e-10 70.9 147 35.4
MD02G1170300 Malus domestica HOM05D000988 ORTHO05D000724 1.4e-10 70.9 218 32.1
MD00G1044500 Malus domestica HOM05D000988 ORTHO05D000724 1.8e-10 70.5 129 43.4
VMungo0251G3785 Vigna mungo HOM05D000988 ORTHO05D000724 1.8e-10 70.5 207 33.3
Cc07_g05910 Coffea canephora HOM05D000988 ORTHO05D000724 2.3e-10 70.1 143 36.4
Migut.K00762 Erythranthe guttata HOM05D000988 ORTHO05D000724 2.3e-10 70.1 189 34.9
Gorai.008G074800 Gossypium raimondii HOM05D000988 ORTHO05D000724 3.0e-10 69.7 133 39.8
Solyc02g090680.3 Solanum lycopersicum HOM05D000988 ORTHO05D000724 3.0e-10 69.7 217 35.0
PGSC0003DMG400015770 Solanum tuberosum HOM05D000988 ORTHO05D000724 3.0e-10 69.7 228 35.1
Duzib187G2011 Durio zibethinus HOM05D000988 ORTHO05D000724 3.9e-10 69.3 134 40.3
TAR625G0816 Trochodendron aralioides HOM05D000988 ORTHO05D000724 3.9e-10 69.3 202 33.7
Glyma.05G085000 Glycine max HOM05D000988 ORTHO05D000724 5.1e-10 68.9 146 39.7
Sopen02g035320 Solanum pennellii HOM05D000988 ORTHO05D000724 8.8e-10 68.2 217 35.0
Hma1.2p1_0461F.1_g157920 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 2.0e-09 67.0 205 34.1
TWI09G0765 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 2.0e-09 67.0 203 36.5
TPR.G21287 Trifolium pratense HOM05D000988 ORTHO05D000724 2.6e-09 66.6 215 33.5
Ca_24777_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 4.4e-09 65.9 126 38.1
Lj2g0013232 Lotus japonicus HOM05D000988 ORTHO05D000724 4.4e-09 65.9 133 36.1
Oeu050777.1 Olea europaea HOM05D000988 ORTHO05D000724 4.4e-09 65.9 206 33.5
Oeu021555.1 Olea europaea HOM05D000988 ORTHO05D000724 5.7e-09 65.5 124 36.3
Sc03g0001510 Simmondsia chinensis HOM05D000988 ORTHO05D000724 5.7e-09 65.5 204 32.4
Atru.chr3.348 Acer truncatum HOM05D000988 ORTHO05D000724 7.4e-09 65.1 213 31.5
SalBow5G1305 Salvia bowleyana HOM05D000988 ORTHO05D000724 7.4e-09 65.1 128 39.8
SalBow5G4663 Salvia bowleyana HOM05D000988 ORTHO05D000724 7.4e-09 65.1 128 39.8
TAR381G0922 Trochodendron aralioides HOM05D000988 ORTHO05D000724 7.4e-09 65.1 222 32.9
arahy.Tifrunner.gnm1.ann1.CAW15G Arachis hypogaea HOM05D000988 ORTHO05D000724 9.7e-09 64.7 125 40.0
Gohir.D12G088300 Gossypium hirsutum HOM05D000988 ORTHO05D000724 9.7e-09 64.7 221 33.0
Lalb_Chr09g0323111 Lupinus albus HOM05D000988 ORTHO05D000724 1.3e-08 64.3 219 33.8
CAN.G836.73 Capsicum annuum HOM05D037394 ORTHO05D000724 1.7e-08 63.9 241 30.7
Rhsim08G0101500 Rhododendron simsii HOM05D000988 ORTHO05D000724 1.7e-08 63.9 210 31.4
Sp4g02420 Schrenkiella parvula HOM05D000988 ORTHO05D000724 1.7e-08 63.9 150 35.3
Lalb_Chr16g0378471 Lupinus albus HOM05D000988 ORTHO05D000724 2.2e-08 63.5 223 33.2
Hma1.2p1_0370F.1_g137940 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 2.8e-08 63.2 182 30.8
Manes.12G103100 Manihot esculenta HOM05D000988 ORTHO05D000724 2.8e-08 63.2 146 31.5
CSS0017394 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 3.7e-08 62.8 254 29.9
Cfa005471 Carpinus fangiana HOM05D000988 ORTHO05D000724 3.7e-08 62.8 137 36.5
Potri.009G103600 Populus trichocarpa HOM05D000988 ORTHO05D000724 3.7e-08 62.8 134 35.8
ClCG02G012780 Citrullus lanatus HOM05D000988 ORTHO05D000724 4.8e-08 62.4 151 30.5
COL.COLO4_11396 Corchorus olitorius HOM05D000988 ORTHO05D000724 4.8e-08 62.4 120 40.8
Gohir.A13G039400 Gossypium hirsutum HOM05D000988 ORTHO05D000724 6.3e-08 62.0 131 37.4
TAR376G0444 Trochodendron aralioides HOM05D000988 ORTHO05D000724 6.3e-08 62.0 213 31.5
unitig_748.g8605 Utricularia gibba HOM05D000988 ORTHO05D000724 6.3e-08 62.0 132 36.4
COL.COLO4_32674 Corchorus olitorius HOM05D000988 ORTHO05D000724 8.2e-08 61.6 136 39.0
Gohir.D13G037900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.1e-07 61.2 132 37.9
MBI02_g17335_MAGBIO Magnolia biondii HOM05D000988 ORTHO05D000724 1.1e-07 61.2 213 31.5
Peaxi162Scf00450g00739 Petunia axillaris HOM05D000988 ORTHO05D000724 1.1e-07 61.2 189 29.1
DCAR_010902 Daucus carota HOM05D000988 ORTHO05D000724 1.4e-07 60.8 126 31.0
Nitab4.5_0000033g0440 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.4e-07 60.8 188 29.3
Rhsim11G0166900 Rhododendron simsii HOM05D000988 ORTHO05D000724 1.4e-07 60.8 227 30.4
MSTRG.23759 Avicennia marina HOM05D000988 ORTHO05D000724 1.8e-07 60.5 206 29.6
CARHR293050 Cardamine hirsuta HOM05D000988 ORTHO05D000724 1.8e-07 60.5 149 38.9
Lj4g0023420 Lotus japonicus HOM05D000988 ORTHO05D000724 1.8e-07 60.5 134 38.1
AL4G13370 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 2.4e-07 60.1 154 39.6
CiPaw.01G019400 Carya illinoinensis HOM05D000988 ORTHO05D000724 2.4e-07 60.1 120 38.3
Gohir.A10G092200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.4e-07 60.1 169 34.9
vmacro05330 Vaccinium macrocarpon HOM05D000988 ORTHO05D000724 2.4e-07 60.1 159 34.0
QL11p036196 Quercus lobata HOM05D000988 ORTHO05D000724 3.1e-07 59.7 132 33.3
MSTRG.15394 Avicennia marina HOM05D000988 ORTHO05D000724 4.1e-07 59.3 133 34.6
Duzib248G0376 Durio zibethinus HOM05D000988 ORTHO05D000724 4.1e-07 59.3 226 27.9
VMungo1215G1251 Vigna mungo HOM05D000988 ORTHO05D000724 4.1e-07 59.3 194 31.4
CiPaw.02G008800 Carya illinoinensis HOM05D000988 ORTHO05D000724 7.0e-07 58.5 118 38.1
Lsat_1_v5_gn_3_91021 Lactuca sativa HOM05D000988 ORTHO05D000724 7.0e-07 58.5 134 38.1
Nn5g30231 Nelumbo nucifera HOM05D000988 ORTHO05D000724 7.0e-07 58.5 222 32.4
CiPaw.06G142900 Carya illinoinensis HOM05D000988 ORTHO05D000724 9.1e-07 58.2 219 28.8
DCAR_025727 Daucus carota HOM05D000988 ORTHO05D000724 9.1e-07 58.2 213 28.6
Dinv23609 Davidia involucrata HOM05D000988 ORTHO05D000724 9.1e-07 58.2 219 32.0
Duzib052G0835 Durio zibethinus HOM05D000988 ORTHO05D000724 1.2e-06 57.8 211 30.3
TAR628G0579 Trochodendron aralioides HOM05D000988 ORTHO05D000724 1.2e-06 57.8 221 32.1
AT2G23430 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 1.5e-06 57.4 150 36.7
Actinidia12960 Actinidia chinensis HOM05D000988 ORTHO05D000724 2.6e-06 56.6 177 33.9
CANSAT01G1117 Cannabis sativa HOM05D000988 ORTHO05D000724 2.6e-06 56.6 132 34.1
Migut.H00444 Erythranthe guttata HOM05D000988 ORTHO05D000724 3.5e-06 56.2 142 35.2
Oeu009754.3 Olea europaea HOM05D000988 ORTHO05D000724 3.5e-06 56.2 62 48.4
Sabra09G0079300 Salix brachista HOM05D000988 ORTHO05D000724 3.5e-06 56.2 221 28.1
Sed0015277 Sechium edule HOM05D000988 ORTHO05D000724 3.5e-06 56.2 155 27.7
Actinidia00450 Actinidia chinensis HOM05D000988 ORTHO05D000724 4.5e-06 55.8 208 31.2
CDE09G0883 Ceratophyllum demersum HOM05D001625 ORTHO05D002663 4.5e-06 55.8 127 32.3
Manes.07G081800 Manihot esculenta HOM05D000988 ORTHO05D000724 4.5e-06 55.8 140 34.3
Potri.004G142100 Populus trichocarpa HOM05D000988 ORTHO05D000724 4.5e-06 55.8 135 30.4
AUR62003862 Chenopodium quinoa HOM05D000988 ORTHO05D000724 5.9e-06 55.5 59 49.2
Thhalv10000332m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 5.9e-06 55.5 206 32.0
Hund16333 Selenicereus undatus HOM05D000988 ORTHO05D000724 5.9e-06 55.5 126 32.5
BcaC07g40986 Brassica carinata HOM05D000988 ORTHO05D000724 7.7e-06 55.1 120 32.5
Cfa004004 Carpinus fangiana HOM05D000988 ORTHO05D000724 7.7e-06 55.1 119 37.0
CiPaw.05G052300 Carya illinoinensis HOM05D000988 ORTHO05D000724 7.7e-06 55.1 132 34.1
Oeu004831.1 Olea europaea HOM05D000988 ORTHO05D000724 7.7e-06 55.1 134 36.6


User provided reference genes

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