Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 1.1e-90 336.7 182 100.0
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 2.6e-87 325.5 179 97.8
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 2.6e-87 325.5 179 97.8
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 6.5e-86 320.9 179 96.1
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.1e-85 320.1 179 96.1
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.3e-81 306.6 182 92.3
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 8.2e-81 303.9 179 92.2
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 1.1e-80 303.5 185 89.7
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 2.4e-80 302.4 182 91.2
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 2.4e-80 302.4 182 91.2
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 4.1e-80 301.6 182 91.2
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 5.0e-78 294.7 186 86.0
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 1.1e-77 293.5 188 86.7
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 4.2e-77 291.6 188 86.2
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 2.3e-75 285.8 189 84.7
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 8.8e-75 283.9 189 83.6
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 3.7e-73 278.5 189 82.5
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 3.0e-59 232.3 186 71.5
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 5.2e-59 231.5 188 70.2
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 9.8e-50 200.7 186 64.0
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 9.8e-50 200.7 182 63.7
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 9.8e-50 200.7 186 63.4
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 3.7e-49 198.7 179 63.7
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 3.7e-49 198.7 179 63.7
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 6.4e-49 198.0 187 62.0
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 3.2e-48 195.7 183 63.9
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 3.2e-48 195.7 191 60.7
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 5.4e-48 194.9 181 62.4
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 9.2e-48 194.1 182 63.7
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 9.2e-48 194.1 182 62.1
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 9.2e-48 194.1 187 60.4
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 1.6e-47 193.4 182 64.3
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.7e-47 192.6 186 61.8
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.7e-47 192.6 189 61.4
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 3.5e-47 192.2 187 62.0
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 3.5e-47 192.2 182 63.7
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 4.6e-47 191.8 188 61.2
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.0e-46 190.7 182 61.5
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 1.0e-46 190.7 182 62.1
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 2.3e-46 189.5 182 62.1
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.0e-46 189.1 182 61.0
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 3.9e-46 188.7 183 60.7
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 8.6e-46 187.6 193 58.0
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 8.6e-46 187.6 187 61.0
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 1.1e-45 187.2 183 62.3
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.1e-45 187.2 187 61.0
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 1.1e-45 187.2 184 62.0
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 3.3e-45 185.7 186 58.6
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 4.3e-45 185.3 184 60.3
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 5.6e-45 184.9 178 61.8
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 5.6e-45 184.9 183 61.2
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.2e-44 183.7 186 61.3
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 2.1e-44 183.0 182 61.0
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 2.8e-44 182.6 186 59.7
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 6.2e-44 181.4 179 59.2
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 8.1e-44 181.0 180 59.4
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.4e-43 180.3 182 59.3
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-43 180.3 182 59.3
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.3e-43 179.5 182 58.2
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 3.1e-43 179.1 182 59.9
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 3.1e-43 179.1 191 57.6
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 4.0e-43 178.7 192 58.9
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 5.2e-43 178.3 183 59.0
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 6.8e-43 177.9 185 58.4
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 6.8e-43 177.9 186 58.6
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 6.8e-43 177.9 185 56.2
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.5e-42 176.8 186 60.2
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 1.5e-42 176.8 176 59.7
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 2.0e-42 176.4 179 60.3
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.0e-42 176.4 185 57.8
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 2.6e-42 176.0 179 58.7
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 5.8e-42 174.9 184 58.7
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.7e-41 173.3 180 56.7
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 8.3e-41 171.0 183 59.6
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.4e-40 169.5 179 56.4
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 2.4e-40 169.5 177 59.3
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 3.2e-40 169.1 183 58.5
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 1.6e-39 166.8 179 57.5
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 2.1e-39 166.4 191 56.0
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.0e-38 164.1 186 55.9
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 1.0e-38 164.1 183 56.8
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 3.0e-38 162.5 181 55.8
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 2.5e-37 159.5 183 56.3
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 2.8e-36 156.0 186 54.8
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 2.8e-36 156.0 231 46.8
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 2.8e-36 156.0 180 56.1
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 6.2e-36 154.8 196 54.1
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 3.1e-35 152.5 182 53.3
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.5e-34 150.2 175 54.9
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 3.4e-34 149.1 129 60.5
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 7.6e-34 147.9 206 48.1
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 7.6e-34 147.9 120 67.5
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 9.9e-34 147.5 195 51.3
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 4.9e-33 145.2 195 50.8
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 8.4e-33 144.4 105 81.0
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 3.2e-32 142.5 164 52.4
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 2.7e-31 139.4 191 49.7
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 7.8e-31 137.9 93 79.6
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 1.7e-30 136.7 127 63.0
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 3.9e-30 135.6 122 62.3
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 3.3e-29 132.5 133 54.9
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 5.6e-29 131.7 191 49.7
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 7.3e-29 131.3 194 46.9
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.1e-28 129.8 191 49.2
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 1.8e-27 126.7 186 49.5
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.1e-27 125.9 147 55.8
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 2.2e-25 119.8 106 67.0
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 2.9e-25 119.4 129 55.8
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 8.4e-25 117.9 161 46.0
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.4e-24 116.3 129 52.7
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 3.2e-24 115.9 93 72.0
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 3.2e-24 115.9 192 42.7
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.1e-24 114.8 162 46.3
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.7e-23 112.8 188 42.6
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.0e-22 110.9 183 44.3
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 3.9e-22 109.0 89 71.9
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 2.1e-20 103.2 116 54.3
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 3.6e-20 102.4 120 51.7
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 4.8e-20 102.1 127 48.8
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 4.8e-20 102.1 123 50.4
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 5.3e-19 98.6 187 44.4
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 6.9e-19 98.2 249 35.7
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 1.1e-16 90.9 187 37.4
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 4.6e-15 85.5 110 44.5
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 3.9e-14 82.4 95 53.7
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 3.3e-13 79.3 85 52.9
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 9.6e-13 77.8 61 77.0
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 9.0e-11 71.2 90 46.7
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 1.2e-10 70.9 97 48.5
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 4.9e-09 65.5 101 40.6
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 8.4e-09 64.7 146 39.7
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 9.3e-08 61.2 75 52.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 2.7e-07 59.7 67 55.2
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 1.0e-06 57.8 92 43.5
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 1.0e-06 57.8 92 43.5


User provided reference genes

Program Settings