Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 1.7e-243 845.5 398 100.0
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 7.0e-234 813.5 384 99.2
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 4.5e-233 810.8 399 95.0
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 4.2e-231 804.3 383 99.0
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 4.2e-231 804.3 383 99.0
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 5.5e-231 803.9 399 94.0
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 6.1e-230 800.4 399 94.0
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 8.0e-230 800.0 399 94.2
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 1.8e-229 798.9 399 93.7
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 4.0e-229 797.7 405 93.8
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 1.2e-228 796.2 399 93.2
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 1.2e-220 769.6 399 90.7
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 2.9e-219 765.0 399 89.0
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 6.2e-214 747.3 384 90.6
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.4e-213 746.1 384 90.4
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 3.1e-213 745.0 384 90.4
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 9.8e-212 740.0 400 86.2
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 2.4e-210 735.3 399 85.2
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 1.0e-208 729.9 402 85.3
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 1.3e-208 729.6 398 85.4
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 5.1e-208 727.6 372 90.1
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 5.1e-208 727.6 397 85.4
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 5.1e-208 727.6 402 84.8
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.1e-207 726.5 399 83.7
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.9e-207 725.7 399 83.5
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.9e-207 725.7 399 83.5
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 5.6e-207 724.2 403 84.9
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.2e-206 723.0 399 84.0
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 3.6e-206 721.5 400 84.0
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 3.6e-206 721.5 399 84.0
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 8.1e-206 720.3 402 84.1
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 8.9e-205 716.8 401 83.5
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 1.2e-204 716.5 398 83.7
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 5.8e-204 714.1 404 83.2
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 9.9e-204 713.4 398 83.4
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 9.9e-204 713.4 401 83.0
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 1.7e-203 712.6 399 83.0
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 2.2e-203 712.2 404 82.2
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 2.9e-203 711.8 402 83.8
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 4.9e-203 711.1 401 82.5
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 6.4e-203 710.7 403 83.1
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 6.4e-203 710.7 401 82.5
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 1.1e-202 709.9 404 81.9
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.4e-202 709.5 401 82.5
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 2.4e-202 708.8 404 82.7
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 3.2e-202 708.4 404 82.4
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 3.2e-202 708.4 400 82.5
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 3.2e-202 708.4 404 82.2
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 3.2e-202 708.4 399 82.7
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 5.4e-202 707.6 401 81.5
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.2e-201 706.4 418 79.4
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 1.2e-201 706.4 399 82.7
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 1.2e-201 706.4 404 82.2
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 2.7e-201 705.3 398 83.2
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 2.7e-201 705.3 409 80.9
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 3.5e-201 704.9 414 81.4
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 3.5e-201 704.9 405 81.7
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 6.0e-201 704.1 403 81.4
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 7.8e-201 703.7 402 81.1
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 3.0e-200 701.8 387 83.5
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 3.9e-200 701.4 401 81.0
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 8.6e-200 700.3 404 81.4
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 3.3e-199 698.4 399 81.0
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 4.3e-199 698.0 409 81.2
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 5.6e-199 697.6 401 80.8
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 9.5e-199 696.8 402 82.1
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 3.6e-198 694.9 390 83.6
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 4.7e-198 694.5 433 77.1
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.8e-197 692.6 403 80.9
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 2.4e-197 692.2 402 81.3
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 2.4e-197 692.2 402 81.3
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 3.1e-197 691.8 353 90.7
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 4.0e-197 691.4 395 82.0
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 1.2e-196 689.9 391 82.4
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 4.4e-196 688.0 402 80.6
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 7.6e-196 687.2 403 79.7
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 9.9e-196 686.8 390 81.8
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 9.9e-196 686.8 399 80.5
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 2.9e-195 685.3 410 79.3
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 6.4e-195 684.1 402 79.9
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 1.1e-194 683.3 400 81.5
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 2.4e-194 682.2 389 81.2
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 3.2e-194 681.8 432 75.5
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 4.2e-194 681.4 414 77.8
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 5.4e-194 681.0 395 80.8
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 1.2e-193 679.9 396 79.5
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 2.1e-193 679.1 399 79.9
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 7.8e-193 677.2 399 79.7
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.9e-191 672.5 399 78.9
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 3.3e-191 671.8 402 78.6
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 5.6e-191 671.0 419 77.6
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.6e-191 671.0 402 79.6
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.1e-189 666.8 391 79.0
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 6.4e-187 657.5 396 78.8
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 1.9e-186 656.0 413 76.0
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 2.3e-184 649.0 364 83.2
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.3e-182 643.3 386 79.5
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 3.1e-181 638.6 403 74.7
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.9e-178 629.4 379 79.2
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 9.3e-178 627.1 407 75.2
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 1.3e-176 623.2 402 74.9
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 1.8e-176 622.9 385 75.6
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 2.3e-176 622.5 399 74.9
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 3.9e-176 621.7 357 81.2
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 2.8e-174 615.5 399 74.4
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 4.8e-174 614.8 401 74.3
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 4.3e-167 591.7 341 80.9
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 2.2e-163 579.3 321 81.9
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 8.4e-163 577.4 393 67.7
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 2.1e-161 572.8 392 70.7
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 1.3e-160 570.1 398 68.1
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 5.7e-159 564.7 391 66.5
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.6e-158 563.1 394 66.2
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 5.1e-152 541.6 305 83.0
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 3.7e-150 535.4 306 82.0
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.1e-145 519.6 306 80.4
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 2.7e-145 519.2 345 71.9
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 3.6e-145 518.8 400 62.8
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.7e-139 500.0 393 60.6
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 1.3e-115 420.6 239 82.8
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 2.2e-102 376.7 266 65.8
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 1.7e-94 350.5 208 77.9
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 1.2e-87 327.8 186 80.1
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.2e-84 317.8 217 71.9
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.5e-82 310.1 434 41.0
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 9.6e-82 308.1 171 81.9
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 2.4e-80 303.5 368 48.9
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 1.3e-78 297.7 160 84.4
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 7.1e-77 292.0 221 62.9
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 2.3e-75 287.0 141 94.3
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 7.9e-68 261.9 146 82.2
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 7.1e-61 238.8 172 65.7
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 2.5e-45 187.2 189 53.4
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 3.8e-30 136.7 72 86.1
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 9.4e-21 105.5 200 37.0
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 1.2e-15 88.6 272 27.2
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 3.5e-07 60.5 51 60.8


User provided reference genes

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