Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 3.6e-29 131.0 68 100.0
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 9.1e-25 116.3 89 75.3
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.6e-24 115.5 84 76.2
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.6e-24 115.5 84 76.2
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 2.6e-24 114.8 66 93.9
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 5.9e-24 113.6 83 77.1
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 5.9e-24 113.6 91 72.5
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.3e-23 112.5 90 73.3
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 1.7e-23 112.1 87 72.4
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 2.9e-23 111.3 84 72.6
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 1.2e-21 105.9 73 83.6
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 6.1e-21 103.6 77 76.6
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 8.8e-20 99.8 100 63.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 1.2e-19 99.4 118 53.4
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 3.4e-19 97.8 101 60.4
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.3e-18 95.9 84 69.0
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 2.4e-17 91.7 66 77.3
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 3.1e-17 91.3 84 66.7
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 5.3e-17 90.5 75 68.0
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 9.1e-17 89.7 84 64.3
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.0e-15 86.3 83 61.4
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.7e-15 85.5 79 62.0
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 2.2e-15 85.1 66 72.7
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 5.0e-15 84.0 66 69.7
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 8.5e-15 83.2 81 60.5
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 8.5e-15 83.2 70 64.3
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.5e-14 82.4 75 61.3
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 1.5e-14 82.4 65 70.8
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 2.5e-14 81.6 78 60.3
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 4.2e-14 80.9 67 65.7
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 5.5e-14 80.5 83 57.8
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 9.4e-14 79.7 123 43.9
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 1.2e-13 79.3 74 64.9
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.2e-13 79.3 83 55.4
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.6e-13 79.0 73 58.9
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.6e-13 79.0 73 58.9
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.1e-13 78.6 73 60.3
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 2.7e-13 78.2 95 52.6
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.7e-13 78.2 84 56.0
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 3.6e-13 77.8 101 50.5
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 4.7e-13 77.4 72 59.7
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 6.1e-13 77.0 83 56.6
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 6.1e-13 77.0 96 53.1
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 8.0e-13 76.6 74 60.8
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 8.0e-13 76.6 97 50.5
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 8.0e-13 76.6 84 56.0
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.0e-12 76.3 70 58.6
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.4e-12 75.9 83 54.2
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.8e-12 75.5 82 54.9
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 1.8e-12 75.5 80 58.8
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 1.8e-12 75.5 72 58.3
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.8e-12 75.5 85 55.3
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 2.3e-12 75.1 81 50.6
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 8.8e-12 73.2 96 46.9
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 1.2e-11 72.8 88 51.1
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 1.2e-11 72.8 88 51.1
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 1.2e-11 72.8 70 62.9
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.5e-11 72.4 65 64.6
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 2.6e-11 71.6 88 51.1
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 3.4e-11 71.2 81 55.6
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 3.4e-11 71.2 93 51.6
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 3.4e-11 71.2 64 65.6
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 4.4e-11 70.9 99 47.5
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 5.7e-11 70.5 98 50.0
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 5.7e-11 70.5 74 54.1
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 7.5e-11 70.1 75 50.7
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.3e-10 69.3 109 44.0
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.2e-10 68.6 74 52.7
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 2.2e-10 68.6 101 43.6
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 2.2e-10 68.6 84 48.8
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.2e-10 68.6 87 48.3
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 2.8e-10 68.2 59 66.1
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 2.8e-10 68.2 75 53.3
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 2.8e-10 68.2 98 48.0
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 3.7e-10 67.8 83 51.8
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.7e-10 67.8 76 55.3
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.8e-10 67.4 87 47.1
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 4.8e-10 67.4 112 43.8
Thhalv10027508m.g Eutrema salsugineum HOM05D003821 ORTHO05D004449 6.3e-10 67.0 43 86.0
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 8.3e-10 66.6 85 51.8
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.1e-09 66.2 74 51.4
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 1.1e-09 66.2 94 45.7
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.1e-09 66.2 70 55.7
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.4e-09 65.9 86 47.7
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 1.4e-09 65.9 108 42.6
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 4.1e-09 64.3 70 54.3
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 7.0e-09 63.5 75 50.7
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 9.1e-09 63.2 38 81.6
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 9.1e-09 63.2 38 81.6
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 1.2e-08 62.8 81 50.6
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.2e-08 62.8 82 48.8
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.0e-08 62.0 79 48.1
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.0e-08 62.0 119 38.7
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 2.0e-08 62.0 79 51.9
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 2.7e-08 61.6 75 54.7
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.5e-08 61.2 129 37.2
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.5e-08 61.2 75 50.7
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 3.5e-08 61.2 78 47.4
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 3.5e-08 61.2 82 46.3
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 4.5e-08 60.8 90 46.7
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 4.5e-08 60.8 103 41.7
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 5.9e-08 60.5 113 40.7
AL6G39190 Arabidopsis lyrata HOM05D006749 ORTHO05D008352 1.0e-07 59.7 38 81.6
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.0e-07 59.7 83 45.8
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.0e-07 59.7 79 46.8
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 1.0e-07 59.7 66 56.1
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 1.3e-07 59.3 38 76.3
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 1.3e-07 59.3 38 76.3
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 1.3e-07 59.3 38 76.3
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.3e-07 59.3 102 42.2
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 1.7e-07 58.9 75 45.3
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.7e-07 58.9 38 73.7
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 2.9e-07 58.2 38 76.3
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.9e-07 58.2 83 44.6
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 2.9e-07 58.2 83 47.0
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 5.0e-07 57.4 38 71.1
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.0e-07 57.4 90 44.4
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 6.6e-07 57.0 84 45.2
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 8.6e-07 56.6 38 71.1
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 8.6e-07 56.6 82 46.3
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 8.6e-07 56.6 38 73.7
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 1.1e-06 56.2 88 44.3
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.1e-06 56.2 84 45.2
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.5e-06 55.8 38 71.1
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.5e-06 55.8 38 71.1
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.5e-06 55.8 38 71.1
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 1.5e-06 55.8 38 71.1
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.5e-06 55.8 83 43.4
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.5e-06 55.8 38 68.4
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 1.9e-06 55.5 130 33.8
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 2.5e-06 55.1 38 68.4
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 4.2e-06 54.3 81 45.7
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 4.2e-06 54.3 86 45.3
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 4.2e-06 54.3 40 62.5
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.5e-06 53.9 37 70.3
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 9.5e-06 53.1 37 73.0


User provided reference genes

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