Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 4.4e-113 411.4 220 100.0
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 1.6e-75 286.6 204 78.9
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 5.9e-73 278.1 202 69.8
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 1.0e-72 277.3 204 68.1
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 1.7e-72 276.6 204 77.5
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 1.1e-71 273.9 204 77.5
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 1.1e-71 273.9 204 77.5
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 1.0e-69 267.3 205 65.4
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 1.3e-69 266.9 202 66.3
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 3.9e-69 265.4 202 64.9
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 6.7e-69 264.6 206 64.6
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 4.8e-67 258.5 212 59.4
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 2.6e-65 252.7 202 62.9
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 6.5e-64 248.1 214 63.1
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 1.9e-63 246.5 218 53.2
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 7.2e-63 244.6 215 54.9
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 9.4e-63 244.2 209 58.4
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.9e-61 238.8 212 54.7
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 9.7e-60 234.2 219 52.1
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.2e-59 233.0 212 54.2
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 4.5e-57 225.3 243 48.6
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 1.0e-56 224.2 176 65.3
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.7e-56 223.4 219 59.8
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 5.5e-55 218.4 207 55.1
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 3.6e-54 215.7 224 50.4
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 2.8e-51 206.1 210 64.3
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 1.3e-48 197.2 212 49.1
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 6.5e-48 194.9 204 58.3
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 1.1e-47 194.1 228 44.3
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 3.2e-47 192.6 209 48.8
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 3.2e-47 192.6 208 47.1
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 3.6e-46 189.1 206 46.1
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 6.1e-46 188.3 205 46.8
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 4.0e-45 185.7 203 60.1
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 6.7e-45 184.9 203 54.2
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 1.2e-44 184.1 208 45.7
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 1.5e-44 183.7 211 57.8
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 1.5e-44 183.7 211 57.8
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 2.0e-44 183.3 172 51.7
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 2.6e-44 183.0 210 45.7
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 4.4e-44 182.2 205 45.9
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 5.7e-44 181.8 209 47.4
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.7e-43 180.3 208 56.7
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 3.7e-43 179.1 166 55.4
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 4.8e-43 178.7 205 47.3
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 6.3e-43 178.3 162 54.3
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 6.3e-43 178.3 172 51.7
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 8.2e-43 177.9 168 64.3
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 1.4e-42 177.2 205 46.3
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 1.8e-42 176.8 205 46.3
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 4.1e-42 175.6 222 42.3
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 4.1e-42 175.6 173 53.8
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 9.1e-42 174.5 203 53.7
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 1.2e-41 174.1 171 51.5
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.6e-41 173.7 174 50.6
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 1.6e-41 173.7 172 50.6
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 3.5e-41 172.6 206 46.6
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 5.9e-41 171.8 203 46.8
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 7.7e-41 171.4 172 61.0
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 1.3e-40 170.6 166 64.5
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 1.3e-40 170.6 167 52.1
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 1.7e-40 170.2 171 51.5
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 2.2e-40 169.9 167 51.5
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 6.5e-40 168.3 168 57.1
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.1e-39 167.5 211 50.2
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.1e-39 167.5 169 49.7
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.5e-39 167.2 169 49.7
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 1.5e-39 167.2 169 49.7
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 1.5e-39 167.2 167 58.7
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 1.9e-39 166.8 169 59.2
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 2.5e-39 166.4 163 49.7
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 2.5e-39 166.4 168 51.8
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 3.2e-39 166.0 167 48.5
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 5.5e-39 165.2 180 45.6
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 7.2e-39 164.9 221 48.9
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 9.4e-39 164.5 205 43.4
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 1.6e-38 163.7 204 43.6
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 2.1e-38 163.3 213 40.4
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 2.7e-38 162.9 165 57.6
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 3.6e-38 162.5 168 47.0
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 4.7e-38 162.2 168 47.0
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 1.8e-37 160.2 169 46.2
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.3e-37 159.8 168 47.6
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 3.0e-37 159.5 213 39.0
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 6.8e-37 158.3 141 53.2
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 1.2e-36 157.5 168 57.7
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.2e-36 157.5 174 47.7
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 1.5e-36 157.1 164 47.0
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 2.6e-36 156.4 164 47.0
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 2.6e-36 156.4 206 41.7
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 5.7e-36 155.2 167 47.9
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 7.5e-36 154.8 166 48.2
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 1.7e-35 153.7 204 38.7
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 2.8e-35 152.9 244 38.9
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 4.8e-35 152.1 206 41.3
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 8.3e-35 151.4 165 47.9
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 4.1e-34 149.1 208 45.2
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 9.1e-34 147.9 165 44.8
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 2.7e-33 146.4 169 45.0
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 3.5e-33 146.0 202 39.1
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 5.9e-33 145.2 164 53.7
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 1.0e-32 144.4 167 51.5
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 1.0e-32 144.4 167 51.5
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 2.2e-32 143.3 167 50.3
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 8.5e-32 141.4 169 45.6
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 1.5e-31 140.6 170 45.3
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 4.2e-31 139.0 170 47.6
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 9.5e-31 137.9 142 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.6e-30 137.1 198 46.0
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 2.1e-30 136.7 168 54.8
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 3.6e-30 136.0 165 44.8
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 4.9e-27 125.6 208 44.7
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 6.3e-27 125.2 173 53.2
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 9.2e-18 94.7 53 73.6
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 5.8e-12 75.5 220 24.5
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 6.4e-11 72.0 128 37.5
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 3.2e-10 69.7 117 50.4
SGA_v2.0_scaffold44G16633 Striga asiatica HOM05D056423 ORTHO05D406573 1.0e-08 64.7 257 30.7
SGA_v2.0_scaffold44G16637 Striga asiatica HOM05D005795 ORTHO05D007200 2.8e-06 56.6 209 26.3


User provided reference genes

Program Settings