Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 5.1e-125 451.1 223 100.0
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 1.6e-118 429.5 221 95.9
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 6.1e-118 427.6 223 94.6
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 1.0e-117 426.8 223 92.4
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 2.5e-116 422.2 223 91.0
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 3.3e-116 421.8 223 93.3
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 3.7e-115 418.3 223 89.7
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 1.1e-114 416.8 223 91.0
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 2.4e-114 415.6 223 91.0
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 2.4e-114 415.6 223 91.0
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 4.1e-114 414.8 223 91.5
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 4.1e-114 414.8 223 91.5
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 2.6e-113 412.1 223 90.6
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 5.9e-113 411.0 223 90.6
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 7.7e-113 410.6 223 90.1
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 7.7e-113 410.6 223 90.6
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 8.8e-109 397.1 223 89.7
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 5.9e-105 384.4 216 86.6
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 2.9e-104 382.1 223 84.8
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 3.6e-102 375.2 195 94.9
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 1.3e-99 366.7 225 84.0
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 3.8e-96 355.1 217 76.5
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.5e-95 353.2 215 80.5
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 1.9e-95 352.8 215 81.4
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 4.2e-95 351.7 217 75.6
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 4.7e-94 348.2 217 77.4
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 4.7e-94 348.2 215 80.5
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 1.0e-93 347.1 218 76.6
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 1.4e-93 346.7 218 76.1
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 1.8e-93 346.3 219 78.1
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 2.3e-93 345.9 219 78.1
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 2.3e-93 345.9 215 78.1
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 6.7e-93 344.4 219 78.1
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 1.1e-92 343.6 219 77.6
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 2.0e-92 342.8 221 75.1
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 2.0e-92 342.8 219 76.3
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 2.0e-92 342.8 215 76.7
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 2.6e-92 342.4 222 77.0
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 2.6e-92 342.4 219 76.3
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 3.3e-92 342.0 222 76.6
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 4.4e-92 341.7 216 76.4
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 5.7e-92 341.3 218 75.7
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 7.5e-92 340.9 219 76.7
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 9.7e-92 340.5 219 78.5
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 2.2e-91 339.3 219 76.3
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 2.2e-91 339.3 222 74.8
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 2.8e-91 339.0 215 76.3
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 2.8e-91 339.0 219 75.3
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 3.7e-91 338.6 220 75.5
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 3.7e-91 338.6 218 76.6
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 3.7e-91 338.6 215 77.7
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 4.8e-91 338.2 219 75.8
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 4.8e-91 338.2 218 75.7
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 1.1e-90 337.0 219 74.4
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.4e-90 336.7 215 75.3
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 2.4e-90 335.9 221 74.7
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 2.4e-90 335.9 215 75.3
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 4.1e-90 335.1 215 76.7
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 4.1e-90 335.1 215 76.7
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 7.0e-90 334.3 216 75.5
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 7.0e-90 334.3 218 74.3
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 9.1e-90 334.0 237 71.7
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 2.0e-89 332.8 215 74.4
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 2.0e-89 332.8 215 74.4
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 2.7e-89 332.4 215 76.3
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 3.5e-89 332.0 219 75.8
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 4.5e-89 331.6 218 74.3
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 4.5e-89 331.6 216 72.7
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 7.7e-89 330.9 219 75.8
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 2.2e-88 329.3 215 74.0
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 2.9e-88 328.9 216 74.1
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 8.5e-88 327.4 218 74.3
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 8.5e-88 327.4 213 75.1
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 8.5e-88 327.4 216 75.9
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.5e-87 325.9 215 74.9
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 3.2e-87 325.5 215 74.0
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 3.2e-87 325.5 216 73.1
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 3.2e-87 325.5 216 75.9
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 3.2e-87 325.5 216 75.9
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.2e-87 325.1 215 74.4
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 4.2e-87 325.1 216 74.5
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 5.5e-87 324.7 215 72.6
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 5.5e-87 324.7 216 74.1
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 1.2e-86 323.6 216 74.5
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.2e-86 323.6 219 76.7
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 2.1e-86 322.8 198 75.8
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 6.1e-86 321.2 198 75.3
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 1.2e-84 317.0 207 75.4
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 3.7e-83 312.0 216 69.0
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 6.3e-83 311.2 208 75.0
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 2.0e-81 306.2 200 70.5
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 5.9e-81 304.7 217 71.4
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 7.7e-81 304.3 218 68.8
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 1.2e-76 290.4 213 68.5
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.5e-76 290.0 217 69.1
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 7.5e-76 287.7 210 67.1
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 9.8e-76 287.3 199 69.8
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 3.7e-75 285.4 209 68.4
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 6.3e-75 284.6 204 70.6
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 3.1e-74 282.3 183 71.0
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 3.5e-73 278.9 223 59.6
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 2.9e-72 275.8 216 64.4
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 8.9e-69 264.2 191 65.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.0e-64 250.8 142 84.5
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.1e-62 243.0 261 53.6
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 2.1e-62 243.0 155 74.8
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 1.8e-61 240.0 151 74.8
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 7.5e-60 234.6 148 75.0
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.0e-56 224.2 180 56.1
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 4.3e-55 218.8 147 72.1
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 5.4e-50 201.8 190 50.0
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.7e-41 172.9 101 82.2
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 6.2e-38 161.8 215 44.7
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.1e-29 134.4 106 60.4
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 3.5e-25 119.4 87 63.2
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 2.5e-23 113.2 66 77.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 7.4e-23 111.7 86 65.1
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 2.8e-22 109.8 66 77.3
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 3.6e-22 109.4 99 54.5
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 2.8e-14 83.2 66 62.1
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 1.6e-09 67.4 144 33.3
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 2.1e-06 57.0 153 29.4
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.1e-06 57.0 153 29.4
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.8e-06 56.6 153 28.8
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 3.7e-06 56.2 41 56.1
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 6.3e-06 55.5 143 27.3


User provided reference genes

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