Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 2638.2 1384 100.0
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 2214.9 1421 84.7
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 2214.1 1414 84.9
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 2196.0 1415 84.8
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 2189.1 1422 84.4
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 0.0e+00 1983.4 1452 76.2
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1867.4 1410 74.4
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 1842.0 1496 69.9
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 0.0e+00 1814.7 1442 71.3
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 1802.7 1477 69.6
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 0.0e+00 1770.7 1453 69.7
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 0.0e+00 1727.2 1455 68.9
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 0.0e+00 1722.6 1466 68.3
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1716.4 1452 68.4
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 1712.6 1461 68.1
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1708.0 1448 68.6
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 1698.3 1460 67.5
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1523.1 1419 64.6
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 0.0e+00 1442.6 1444 59.9
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 0.0e+00 1114.0 1508 50.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.5e-302 1042.7 1489 48.6
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 5.5e-185 652.9 1591 35.9
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.0e-175 622.1 1620 35.6
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.1e-174 618.6 1669 35.4
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 4.4e-174 616.7 1624 35.2
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.2e-173 614.4 1614 35.6
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 2.8e-173 614.0 1611 35.1
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 9.1e-172 609.0 1498 36.1
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 7.5e-166 589.3 1608 34.0
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 1.5e-161 575.1 1597 34.2
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 7.0e-156 556.2 1620 34.3
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.7e-154 551.6 1605 33.6
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 5.0e-154 550.1 1574 33.9
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 7.2e-153 546.2 1625 34.2
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 1.6e-152 545.0 1613 33.4
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.2e-150 538.9 1587 34.1
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 4.1e-148 530.4 1587 33.2
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 4.1e-148 530.4 1548 33.4
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 4.6e-147 526.9 1655 32.6
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.9e-146 523.9 1601 34.0
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 3.3e-145 520.8 1576 33.8
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 9.5e-145 519.2 1549 33.6
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.6e-144 518.5 1600 33.1
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 2.1e-144 518.1 1580 32.7
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 2.8e-144 517.7 1615 32.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 6.2e-144 516.5 1549 32.9
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 8.0e-144 516.2 1658 32.5
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 7.5e-142 509.6 1689 32.3
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.3e-141 508.8 1599 32.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.1e-140 505.8 1591 32.8
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.4e-140 505.4 1613 33.0
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 3.2e-140 504.2 1629 32.0
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 4.1e-140 503.8 1698 32.4
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.0e-138 499.2 1567 32.7
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 6.2e-136 490.0 1593 32.0
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 5.2e-135 486.9 1627 32.8
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.5e-134 485.3 1587 32.5
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 2.0e-134 485.0 1579 32.2
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 2.2e-133 481.5 1599 32.6
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.9e-133 480.3 1582 32.5
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 7.1e-132 476.5 1577 31.8
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 6.0e-131 473.4 1569 31.7
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.6e-129 466.8 1663 30.9
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 3.1e-127 461.1 1585 31.9
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.5e-126 458.8 1598 32.0
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 7.6e-126 456.4 1600 32.2
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 9.9e-126 456.1 1557 31.8
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 6.4e-125 453.4 1592 32.2
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.4e-124 451.4 1649 30.7
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.1e-124 449.9 1561 31.0
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 3.5e-123 447.6 1594 31.4
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.0e-122 444.5 1578 31.2
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 3.9e-122 444.1 1553 31.5
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.9e-121 441.8 1595 31.7
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.3e-121 441.0 1554 32.4
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.2e-120 439.1 1594 30.7
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 4.0e-119 434.1 1565 31.0
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 6.0e-115 420.2 1642 30.6
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 6.0e-115 420.2 1634 30.6
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 3.9e-114 417.5 1283 32.9
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.9e-113 415.2 1598 31.4
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 9.0e-111 406.4 1603 30.9
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 3.4e-110 404.4 1615 29.4
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 5.8e-110 403.7 1520 30.9
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 9.9e-110 402.9 1551 31.2
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 6.4e-109 400.2 1576 30.7
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 8.4e-109 399.8 1517 30.5
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 3.2e-108 397.9 1613 29.0
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 2.7e-107 394.8 1612 29.4
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 7.3e-105 386.7 1674 29.7
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 9.6e-105 386.3 1118 33.5
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 4.0e-103 380.9 1628 29.7
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 2.0e-102 378.6 1575 30.2
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 3.4e-102 377.9 1521 30.8
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 5.8e-102 377.1 1674 29.2
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 9.9e-102 376.3 1488 29.1
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 1.1e-97 362.8 1431 30.4
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 4.0e-95 354.4 1613 29.9
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 9.0e-95 353.2 638 41.2
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.5e-94 352.4 1714 28.4
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 4.5e-94 350.9 1616 28.4
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 7.6e-94 350.1 1631 27.7
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 7.9e-91 340.1 1430 30.1
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 7.9e-91 340.1 1580 29.1
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.8e-90 339.0 1643 29.4
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 6.7e-90 337.0 1558 28.8
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 7.4e-89 333.6 1532 28.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 1.7e-85 322.4 1565 28.8
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.8e-80 304.3 1614 27.3
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.8e-79 302.4 1555 26.8
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 4.1e-79 301.2 1714 27.5
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.9e-77 295.0 1530 27.8
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.4e-76 292.7 718 34.8
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.4e-76 292.7 1704 27.2
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 2.3e-74 285.4 1619 28.2
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-73 282.3 343 52.5
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 3.8e-69 268.1 1535 29.1
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.3e-65 255.0 1182 28.7
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.9e-61 241.9 1337 27.7
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 6.1e-59 234.2 194 66.5
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.8e-56 224.6 965 29.7
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 6.3e-56 224.2 183 67.8
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.1e-55 220.3 1182 27.2
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.7e-54 218.8 195 62.1
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.2e-53 215.7 216 57.9
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.2e-53 215.7 1457 26.4
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.2e-51 209.9 1482 26.0
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 6.1e-51 207.6 1585 25.9
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 3.1e-47 195.3 452 37.6
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 2.1e-43 182.6 1143 26.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.1e-43 182.6 205 55.1
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.4e-42 179.9 705 30.5
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 2.0e-41 176.0 247 53.0
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 2.0e-41 176.0 247 53.0
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 7.5e-41 174.1 1338 25.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 7.5e-41 174.1 1437 26.2
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 7.5e-41 174.1 1289 25.3
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.6e-35 156.4 1472 23.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.1e-31 141.7 478 28.9
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.1e-31 141.7 1182 25.7
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.0e-31 141.0 297 40.4
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.2e-26 124.8 677 26.6
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 2.4e-23 115.9 497 32.0
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.2e-23 115.5 1360 25.4
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.6e-22 113.2 82 69.5
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.3e-20 105.5 509 31.2
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.3e-20 105.1 401 32.4
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.2e-18 98.2 236 38.6
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.5e-17 96.7 343 34.7
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 5.8e-17 94.7 804 24.6
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.9e-15 89.7 482 28.8
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 1.3e-13 83.6 448 31.7
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.6e-11 76.6 1225 24.3
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-07 63.5 203 30.5


User provided reference genes

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