Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32828 Brassica carinata HOM05D003385 ORTHO05D003844 4.8e-52 207.6 108 100.0
BcaC06g32830 Brassica carinata HOM05D003385 ORTHO05D003844 7.4e-21 104.0 57 89.5
C07p54110 Brassica napus HOM05D003385 ORTHO05D003844 7.4e-21 104.0 57 89.5
A03p55830 Brassica napus HOM05D003385 ORTHO05D003844 2.2e-20 102.4 57 87.7
BraA03t14651Z Brassica rapa HOM05D003385 ORTHO05D003844 2.2e-20 102.4 57 87.7
BolC7t45897H Brassica oleracea HOM05D003385 ORTHO05D003844 2.8e-20 102.1 57 87.7
AT4G25225 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 6.9e-19 97.4 60 78.3
Carub.0007s1580 Capsella rubella HOM05D003385 ORTHO05D003844 6.9e-19 97.4 57 82.5
AL7G27920 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 2.6e-18 95.5 57 80.7
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 2.7e-15 85.5 57 71.9
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 3.6e-15 85.1 58 75.9
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 6.1e-15 84.3 57 71.9
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 8.0e-15 84.0 55 70.9
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 1.4e-14 83.2 93 49.5
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 1.8e-14 82.8 57 68.4
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 1.8e-14 82.8 57 68.4
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 1.8e-14 82.8 57 68.4
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 2.3e-14 82.4 52 76.9
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 5.2e-14 81.3 55 67.3
Thecc.03G156100 Theobroma cacao HOM05D003385 ORTHO05D003844 5.2e-14 81.3 55 70.9
Duzib068G0982 Durio zibethinus HOM05D003385 ORTHO05D003844 8.8e-14 80.5 55 70.9
Atru.chr1.724 Acer truncatum HOM05D003385 ORTHO05D003844 1.1e-13 80.1 55 69.1
Gohir.A03G058800 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.5e-13 79.7 55 65.5
Gohir.D03G107300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.5e-13 79.7 55 65.5
Gorai.003G113600 Gossypium raimondii HOM05D003385 ORTHO05D003844 1.5e-13 79.7 55 65.5
TAR374G1520 Trochodendron aralioides HOM05D003385 ORTHO05D003844 1.5e-13 79.7 55 69.1
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 2.0e-13 79.3 55 72.7
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 2.0e-13 79.3 55 65.5
GSVIVG01018638001 Vitis vinifera HOM05D003385 ORTHO05D003844 2.0e-13 79.3 55 67.3
Hma1.2p1_0432F.1_g151710 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 1.3e-12 76.6 55 67.3
Sopen06g010940 Solanum pennellii HOM05D003385 ORTHO05D003844 1.3e-12 76.6 62 61.3
BcaNung06354 Brassica carinata HOM05D003385 ORTHO05D003844 1.7e-12 76.3 49 75.5
COL.COLO4_14125 Corchorus olitorius HOM05D003385 ORTHO05D003844 1.7e-12 76.3 55 67.3
Gohir.A12G198600 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.7e-12 76.3 55 65.5
Gohir.D12G201300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.7e-12 76.3 55 65.5
Gorai.008G216400 Gossypium raimondii HOM05D003385 ORTHO05D003844 1.7e-12 76.3 55 65.5
THA.LOC104825062 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 1.7e-12 76.3 57 66.7
CANSAT56G4393 Cannabis sativa HOM05D003385 ORTHO05D003844 2.8e-12 75.5 55 61.8
Nn1g01044 Nelumbo nucifera HOM05D003385 ORTHO05D003844 3.7e-12 75.1 55 61.8
Potri.001G124100 Populus trichocarpa HOM05D003385 ORTHO05D003844 3.7e-12 75.1 55 63.6
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 3.7e-12 75.1 55 65.5
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 3.7e-12 75.1 49 71.4
Cfa008171 Carpinus fangiana HOM05D003385 ORTHO05D003844 8.2e-12 73.9 55 61.8
Eucgr.E00434 Eucalyptus grandis HOM05D003385 ORTHO05D003844 8.2e-12 73.9 62 54.8
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 1.1e-11 73.6 55 65.5
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 1.1e-11 73.6 55 60.0
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 2.4e-11 72.4 55 58.2
CSS0015376 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.1e-11 72.0 61 55.7
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 4.1e-11 71.6 63 50.8
Sed0003372 Sechium edule HOM05D003385 ORTHO05D003844 4.1e-11 71.6 55 60.0
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 5.3e-11 71.2 55 58.2
MELO3C007606.2 Cucumis melo HOM05D003385 ORTHO05D003844 5.3e-11 71.2 55 58.2
Glyma.13G370600 Glycine max HOM05D003385 ORTHO05D003844 5.3e-11 71.2 55 58.2
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 5.3e-11 71.2 55 63.6
Nn6g33986 Nelumbo nucifera HOM05D003385 ORTHO05D003844 5.3e-11 71.2 55 58.2
Solyc06g034320.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 5.3e-11 71.2 55 63.6
CAN.G49.2 Capsicum annuum HOM05D003385 ORTHO05D003844 9.1e-11 70.5 55 61.8
Nn6g33988 Nelumbo nucifera HOM05D003385 ORTHO05D003844 9.1e-11 70.5 56 55.4
CANSAT21G1636 Cannabis sativa HOM05D003385 ORTHO05D003844 1.2e-10 70.1 55 61.8
Glyma.18G147400 Glycine max HOM05D003385 ORTHO05D003844 1.2e-10 70.1 55 60.0
Manes.02G038600 Manihot esculenta HOM05D003385 ORTHO05D003844 1.2e-10 70.1 55 60.0
CARHR248220 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.6e-10 69.7 53 54.7
Phvul.005G182800 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.6e-10 69.7 55 58.2
Glyma.15G003000 Glycine max HOM05D003385 ORTHO05D003844 2.0e-10 69.3 55 58.2
Oeu015324.1 Olea europaea HOM05D003385 ORTHO05D003844 2.0e-10 69.3 55 61.8
Potri.014G059600 Populus trichocarpa HOM05D003385 ORTHO05D003844 2.0e-10 69.3 60 60.0
Cfa011180 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.6e-10 68.9 57 59.6
Lj3g0012323 Lotus japonicus HOM05D003385 ORTHO05D003844 2.6e-10 68.9 55 56.4
Manes.06G135000 Manihot esculenta HOM05D003385 ORTHO05D003844 3.5e-10 68.6 55 58.2
Prupe.5G072000 Prunus persica HOM05D003385 ORTHO05D003844 3.5e-10 68.6 55 58.2
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 3.5e-10 68.6 55 60.0
Sed0011687 Sechium edule HOM05D003385 ORTHO05D003844 3.5e-10 68.6 55 58.2
Zm00001eb265740 Zea mays HOM05D003385 ORTHO05D003844 4.5e-10 68.2 58 58.6
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 7.7e-10 67.4 53 54.7
RcHm_v2.0_Chr7g0202941 Rosa chinensis HOM05D003385 ORTHO05D003844 7.7e-10 67.4 54 57.4
Zm00001eb094930 Zea mays HOM05D003385 ORTHO05D003844 7.7e-10 67.4 55 58.2
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.0e-09 67.0 53 56.6
Migut.A00964 Erythranthe guttata HOM05D003385 ORTHO05D003844 1.0e-09 67.0 55 58.2
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 1.0e-09 67.0 55 60.0
arahy.Tifrunner.gnm1.ann1.4KS3AX Arachis hypogaea HOM05D003385 ORTHO05D003844 1.3e-09 66.6 58 58.6
Carub.0006s3706 Capsella rubella HOM05D003385 ORTHO05D003844 1.3e-09 66.6 57 54.4
Ca_01010_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 1.3e-09 66.6 55 56.4
DCAR_020191 Daucus carota HOM05D003385 ORTHO05D003844 1.3e-09 66.6 55 56.4
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 1.3e-09 66.6 53 54.7
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.3e-09 66.6 53 56.6
Atru.chr9.1329 Acer truncatum HOM05D003385 ORTHO05D003844 1.7e-09 66.2 54 59.3
DCAR_008484 Daucus carota HOM05D003385 ORTHO05D003844 1.7e-09 66.2 55 54.5
Migut.F01181 Erythranthe guttata HOM05D003385 ORTHO05D003844 1.7e-09 66.2 55 58.2
FAN11G3453 Fragaria x ananassa HOM05D003385 ORTHO05D003844 1.7e-09 66.2 54 57.4
FAN21G1696 Fragaria x ananassa HOM05D003385 ORTHO05D003844 1.7e-09 66.2 54 57.4
HanXRQChr06g0164351 Helianthus annuus HOM05D003385 ORTHO05D003844 2.2e-09 65.9 51 60.8
Lalb_Chr04g0263501 Lupinus albus HOM05D003385 ORTHO05D003844 2.2e-09 65.9 53 56.6
CSS0013240 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 2.9e-09 65.5 45 64.4
CSS0043100 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 2.9e-09 65.5 45 64.4
HanXRQChr02g0049331 Helianthus annuus HOM05D003385 ORTHO05D003844 2.9e-09 65.5 55 54.5
Sc01g0008530 Simmondsia chinensis HOM05D003385 ORTHO05D003844 2.9e-09 65.5 56 57.1
VMungo0331G0997 Vigna mungo HOM05D004080 ORTHO05D003844 2.9e-09 65.5 55 54.5
CSS0007736 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.8e-09 65.1 46 63.0
CSS0016808 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.8e-09 65.1 61 49.2
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 3.8e-09 65.1 55 52.7
Cc08_g12660 Coffea canephora HOM05D003385 ORTHO05D003844 3.8e-09 65.1 54 53.7
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 3.8e-09 65.1 53 54.7
MD06G1061000 Malus domestica HOM05D003385 ORTHO05D003844 3.8e-09 65.1 55 52.7
Rhsim06G0032500 Rhododendron simsii HOM05D003046 ORTHO05D003428 3.8e-09 65.1 52 55.8
DCAR_024764 Daucus carota HOM05D003385 ORTHO05D003844 5.0e-09 64.7 58 56.9
FAN25G0283 Fragaria x ananassa HOM05D003385 ORTHO05D003844 5.0e-09 64.7 54 55.6
Manes.01G079400 Manihot esculenta HOM05D003385 ORTHO05D003844 5.0e-09 64.7 55 54.5
Peaxi162Scf00002g01611 Petunia axillaris HOM05D003385 ORTHO05D003844 5.0e-09 64.7 55 56.4
Sabra14G0043600 Salix brachista HOM05D003385 ORTHO05D003844 5.0e-09 64.7 60 55.0
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 5.0e-09 64.7 60 55.0
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 6.5e-09 64.3 55 54.5
Rhsim09G0191500 Rhododendron simsii HOM05D003385 ORTHO05D003844 6.5e-09 64.3 45 66.7
Ca_06643_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 8.5e-09 63.9 51 58.8
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 8.5e-09 63.9 49 59.2
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 8.5e-09 63.9 55 52.7
CSS0009843 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.5e-08 63.2 61 47.5
HanXRQChr02g0049401 Helianthus annuus HOM05D003385 ORTHO05D003844 1.5e-08 63.2 47 55.3
Psat7g263040 Pisum sativum HOM05D003385 ORTHO05D003844 1.5e-08 63.2 53 54.7
Potri.001G123000 Populus trichocarpa HOM05D003385 ORTHO05D003844 1.5e-08 63.2 54 51.9
AT2G35736 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 1.9e-08 62.8 54 53.7
A04p27190 Brassica napus HOM05D003385 ORTHO05D003844 1.9e-08 62.8 56 55.4
BraA04t18217Z Brassica rapa HOM05D003385 ORTHO05D003844 1.9e-08 62.8 56 55.4
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.9e-08 62.8 55 52.7
CiPaw.13G033300 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.9e-08 62.8 53 47.2
Glyma.08G219600 Glycine max HOM05D003385 ORTHO05D003844 1.9e-08 62.8 51 56.9
AagrBONN_evm.TU.Sc2ySwM_368.2415 Anthoceros agrestis HOM05D003385 ORTHO05D003844 2.5e-08 62.4 55 54.5
BcaC02g07674 Brassica carinata HOM05D003385 ORTHO05D003844 2.5e-08 62.4 56 55.4
C04p64700 Brassica napus HOM05D003385 ORTHO05D003844 2.5e-08 62.4 56 55.4
BolC4t27948H Brassica oleracea HOM05D003385 ORTHO05D003844 2.5e-08 62.4 56 55.4
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.5e-08 62.4 54 53.7
Cfa011181 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.5e-08 62.4 57 56.1
Phvul.010G162200 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 2.5e-08 62.4 51 54.9
BcaB06g28869 Brassica carinata HOM05D003385 ORTHO05D003844 3.2e-08 62.0 55 52.7
Prupe.5G071800 Prunus persica HOM05D003385 ORTHO05D003844 3.2e-08 62.0 55 52.7
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 4.2e-08 61.6 55 49.1
PSO210G0600 Papaver somniferum HOM05D003385 ORTHO05D003844 4.2e-08 61.6 55 54.5
Sc25g0000080 Simmondsia chinensis HOM05D003385 ORTHO05D003844 4.2e-08 61.6 58 46.6
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 5.5e-08 61.2 54 51.9
Carub.0007s2496 Capsella rubella HOM05D003385 ORTHO05D003844 5.5e-08 61.2 56 51.8
Lj2g0011318 Lotus japonicus HOM05D003385 ORTHO05D003844 5.5e-08 61.2 57 50.9
Medtr4g007230 Medicago truncatula HOM05D003385 ORTHO05D003844 5.5e-08 61.2 55 52.7
Nitab4.5_0012281g0010 Nicotiana tabacum HOM05D003385 ORTHO05D003844 5.5e-08 61.2 55 52.7
PSO063G5519 Papaver somniferum HOM05D003385 ORTHO05D003844 5.5e-08 61.2 55 54.5
PSO782G4697 Papaver somniferum HOM05D003385 ORTHO05D003844 5.5e-08 61.2 55 54.5
TAR375G0116 Trochodendron aralioides HOM05D003385 ORTHO05D003844 5.5e-08 61.2 45 60.0
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 7.2e-08 60.8 56 55.4
AL4G31830 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 7.2e-08 60.8 54 51.9
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 7.2e-08 60.8 56 53.6
CARHR129980 Cardamine hirsuta HOM05D003385 ORTHO05D003844 9.4e-08 60.5 54 51.9
Glyma.11G031900 Glycine max HOM05D003385 ORTHO05D003844 9.4e-08 60.5 55 49.1
Solyc08g078790.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 9.4e-08 60.5 55 54.5
Lalb_Chr00c36g0408871 Lupinus albus HOM05D003385 ORTHO05D003844 1.2e-07 60.1 55 49.1
Lalb_Chr24g0392851 Lupinus albus HOM05D003385 ORTHO05D003844 1.2e-07 60.1 55 49.1
CAN.G1218.14 Capsicum annuum HOM05D003385 ORTHO05D003844 1.6e-07 59.7 55 50.9
CSS0014285 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 2.1e-07 59.3 52 51.9
Medtr5g012410 Medicago truncatula HOM05D003385 ORTHO05D003844 2.7e-07 58.9 48 58.3
Os05g0118800 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 2.7e-07 58.9 49 55.1
EL10Ac3g05843 Beta vulgaris HOM05D003385 ORTHO05D003844 3.6e-07 58.5 56 44.6
Os07g0239500 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 3.6e-07 58.5 55 52.7
Phvul.002G062300 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 3.6e-07 58.5 55 47.3
Mapoly0083s0036 Marchantia polymorpha HOM05D003385 ORTHO05D003844 6.1e-07 57.8 53 50.9
CAN.G1469.7 Capsicum annuum HOM05D023894 ORTHO05D024776 8.0e-07 57.4 50 52.0
Zm00001eb303930 Zea mays HOM05D003385 ORTHO05D003844 8.0e-07 57.4 47 57.4
AUR62002201 Chenopodium quinoa HOM05D003385 ORTHO05D003844 1.0e-06 57.0 48 47.9
Duzib138G0675 Durio zibethinus HOM05D003385 ORTHO05D003844 1.0e-06 57.0 49 53.1
Pp3c5_5420 Physcomitrium patens HOM05D003385 ORTHO05D003844 1.0e-06 57.0 56 51.8
Migut.B01603 Erythranthe guttata HOM05D003385 ORTHO05D003844 1.4e-06 56.6 49 53.1
Thecc.01G381400 Theobroma cacao HOM05D003385 ORTHO05D003844 1.4e-06 56.6 52 50.0
BcaC09g50363 Brassica carinata HOM05D003385 ORTHO05D003844 1.8e-06 56.2 56 48.2
BcaNung00182 Brassica carinata HOM05D003385 ORTHO05D003844 1.8e-06 56.2 56 50.0
C01p26210 Brassica napus HOM05D003385 ORTHO05D003844 1.8e-06 56.2 56 48.2
BolC1t02564H Brassica oleracea HOM05D003385 ORTHO05D003844 1.8e-06 56.2 56 48.2
BolC1t02565H Brassica oleracea HOM05D003385 ORTHO05D003844 1.8e-06 56.2 56 48.2
CARHR222940 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.8e-06 56.2 54 48.1
TPR.G25901 Trifolium pratense HOM05D003385 ORTHO05D003844 1.8e-06 56.2 47 51.1
GSVIVG01027642001 Vitis vinifera HOM05D003385 ORTHO05D003844 1.8e-06 56.2 55 45.5
AL7G38420 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 4.0e-06 55.1 56 48.2
Cc02_g24330 Coffea canephora HOM05D003385 ORTHO05D003844 4.0e-06 55.1 49 46.9
COL.COLO4_12504 Corchorus olitorius HOM05D003385 ORTHO05D003844 4.0e-06 55.1 49 49.0
HanXRQChr13g0396331 Helianthus annuus HOM05D003385 ORTHO05D003844 4.0e-06 55.1 53 49.1
SMO301G0071 Selaginella moellendorffii HOM05D003385 ORTHO05D003844 4.0e-06 55.1 56 44.6
Gohir.A11G079000 Gossypium hirsutum HOM05D003385 ORTHO05D003844 5.2e-06 54.7 59 45.8
Gorai.007G089200 Gossypium raimondii HOM05D003385 ORTHO05D003844 5.2e-06 54.7 59 45.8
arahy.Tifrunner.gnm1.ann1.I3YFFK Arachis hypogaea HOM05D003385 ORTHO05D003844 6.7e-06 54.3 46 58.7


User provided reference genes

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