Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.2e-140 503.8 395 100.0
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 3.3e-127 459.1 395 85.6
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 3.3e-127 459.1 395 85.6
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 2.5e-122 443.0 396 90.7
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 1.4e-120 437.2 400 80.0
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 5.0e-115 418.7 397 89.2
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 5.0e-115 418.7 397 89.2
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 1.6e-113 413.7 397 88.9
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 6.7e-112 408.3 397 87.4
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.2e-107 393.3 395 84.8
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 7.2e-106 388.3 395 86.8
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.7e-102 377.1 395 85.1
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.7e-102 375.9 398 84.7
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 2.0e-92 343.6 398 77.4
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.2e-71 274.6 405 64.2
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.3e-66 256.5 397 65.0
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 1.6e-52 211.1 351 61.8
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 8.7e-51 205.3 326 66.0
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 7.3e-50 202.2 332 57.2
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.6e-49 201.1 332 57.8
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.6e-49 199.9 332 68.4
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 4.7e-49 199.5 340 66.8
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 4.7e-49 199.5 351 63.8
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 2.4e-48 197.2 332 68.4
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 4.0e-48 196.4 345 62.6
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 9.0e-48 195.3 333 63.4
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.2e-47 194.9 332 63.9
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 1.5e-47 194.5 389 57.8
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.5e-47 194.5 323 58.8
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.0e-47 194.1 332 63.6
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 9.9e-47 191.8 349 66.2
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 1.7e-46 191.0 337 62.6
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.2e-46 190.7 288 79.5
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.9e-46 190.3 323 62.2
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 3.8e-46 189.9 332 63.3
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 3.8e-46 189.9 332 63.3
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 3.8e-46 189.9 332 63.3
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 3.8e-46 189.9 332 63.3
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 6.4e-46 189.1 342 66.7
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 8.4e-46 188.7 324 63.3
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 1.1e-45 188.3 332 63.0
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 1.1e-45 188.3 307 73.6
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.2e-45 186.8 390 55.6
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 3.2e-45 186.8 337 66.8
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 3.2e-45 186.8 364 64.0
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 4.2e-45 186.4 333 64.0
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 7.1e-45 185.7 339 61.4
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 7.1e-45 185.7 332 58.4
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 7.1e-45 185.7 320 61.6
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 9.3e-45 185.3 332 60.2
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 1.2e-44 184.9 338 60.7
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 2.1e-44 184.1 332 58.1
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.1e-44 184.1 343 66.8
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 2.1e-44 184.1 339 61.7
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.1e-44 184.1 388 55.7
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 2.7e-44 183.7 389 54.8
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 2.7e-44 183.7 326 68.1
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.5e-44 183.3 379 57.0
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.5e-44 183.3 332 57.8
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 4.6e-44 183.0 295 68.5
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 4.6e-44 183.0 335 66.0
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 4.6e-44 183.0 340 62.1
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 6.0e-44 182.6 332 60.5
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 7.8e-44 182.2 333 66.1
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.3e-43 181.4 336 48.5
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 1.7e-43 181.0 334 59.0
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 5.1e-43 179.5 332 57.5
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 6.6e-43 179.1 340 47.6
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 8.7e-43 178.7 334 66.5
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.1e-42 178.3 346 64.5
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 1.5e-42 177.9 339 60.8
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 1.9e-42 177.6 332 67.5
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 2.5e-42 177.2 332 63.3
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 2.5e-42 177.2 332 63.3
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 2.5e-42 177.2 332 61.1
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 3.3e-42 176.8 334 54.8
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.1e-41 174.1 345 59.1
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.1e-41 174.1 340 57.4
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 2.1e-41 174.1 321 67.0
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 4.8e-41 172.9 332 59.9
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 4.8e-41 172.9 332 59.9
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 4.8e-41 172.9 332 61.7
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 6.2e-41 172.6 341 58.7
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.1e-40 171.8 339 59.9
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.4e-40 171.4 340 58.2
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.4e-40 170.6 365 57.5
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 3.1e-40 170.2 324 58.6
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 3.1e-40 170.2 332 59.9
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 3.1e-40 170.2 330 65.2
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 6.9e-40 169.1 338 53.8
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 1.5e-39 167.9 332 48.2
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 2.6e-39 167.2 343 64.7
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 3.4e-39 166.8 335 65.4
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 3.4e-39 166.8 272 70.6
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 1.3e-38 164.9 340 54.4
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 3.8e-38 163.3 343 63.6
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 3.8e-38 163.3 374 60.4
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 6.4e-38 162.5 311 65.3
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 6.4e-38 162.5 355 62.5
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 8.4e-38 162.2 350 64.6
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 1.1e-37 161.8 360 51.7
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.1e-37 161.8 313 65.8
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.4e-37 160.6 301 68.1
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 2.4e-37 160.6 321 62.3
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 3.2e-37 160.2 350 64.6
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 4.2e-37 159.8 341 55.4
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 4.2e-37 159.8 323 66.9
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 5.4e-37 159.5 301 63.1
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 9.3e-37 158.7 326 57.1
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.2e-36 158.3 348 60.6
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.0e-35 155.2 332 63.0
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.9e-35 153.3 332 58.7
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 5.1e-35 152.9 319 65.5
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 6.7e-35 152.5 341 60.4
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 1.5e-34 151.4 391 57.5
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 2.5e-34 150.6 373 41.8
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.3e-34 150.2 332 58.4
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.3e-34 150.2 332 54.5
BcaC08g43401 Brassica carinata HOM05D003453 ORTHO05D004154 4.3e-34 149.8 83 90.4
C06p07690 Brassica napus HOM05D003453 ORTHO05D004154 4.3e-34 149.8 83 90.4
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 1.6e-33 147.9 341 58.7
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.1e-33 147.5 296 60.5
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.8e-33 147.1 332 57.8
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 8.1e-33 145.6 342 57.9
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.1e-32 145.2 323 59.4
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.1e-32 145.2 343 63.0
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 1.4e-32 144.8 302 61.3
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.4e-32 144.1 323 58.8
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 4.0e-32 143.3 327 56.6
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 9.0e-32 142.1 302 60.6
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 9.0e-32 142.1 260 76.9
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.5e-31 141.4 388 53.1
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 2.0e-31 141.0 332 56.6
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 2.6e-31 140.6 362 60.2
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 3.4e-31 140.2 267 63.7
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 4.5e-31 139.8 362 60.5
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.7e-30 137.9 337 59.6
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 2.2e-30 137.5 349 53.0
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 2.9e-30 137.1 329 58.1
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 4.9e-30 136.3 279 71.7
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 3.2e-29 133.7 332 62.0
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 7.1e-29 132.5 334 62.6
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 2.7e-28 130.6 271 66.4
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 6.0e-28 129.4 345 51.6
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 6.0e-28 129.4 307 63.2
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 6.0e-28 129.4 373 46.1
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 1.8e-27 127.9 245 69.4
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 3.0e-27 127.1 262 69.1
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 5.1e-27 126.3 263 66.9
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 4.3e-26 123.2 350 56.3
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 4.3e-26 123.2 344 56.4
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 1.3e-25 121.7 332 59.3
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 2.1e-25 120.9 332 59.3
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 4.8e-25 119.8 319 62.4
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 4.0e-24 116.7 325 53.2
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 9.0e-24 115.5 283 50.2
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 2.6e-23 114.0 332 54.8
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 3.4e-23 113.6 332 54.8
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 4.5e-23 113.2 332 55.7
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 7.6e-23 112.5 343 51.0
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.0e-22 112.1 332 61.4
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 4.9e-22 109.8 264 65.5
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.1e-21 108.6 176 47.2
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.4e-21 108.2 269 64.7
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 9.3e-21 105.5 176 47.2
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 9.3e-21 105.5 268 61.9
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 9.3e-21 105.5 268 61.9
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 9.3e-21 105.5 268 61.9
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 7.9e-20 102.4 208 55.3
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 1.8e-19 101.3 222 50.5
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 5.1e-19 99.8 335 36.7
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 6.7e-19 99.4 265 61.9
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 6.7e-19 99.4 358 54.7
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.5e-18 98.2 228 49.6
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.5e-18 98.2 307 33.9
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.3e-17 95.1 215 47.9
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.1e-16 92.0 261 45.2
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.1e-16 92.0 261 45.2
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 5.3e-16 89.7 220 55.0
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 5.3e-16 89.7 260 45.0
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.2e-15 88.6 78 61.5
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 1.2e-15 88.6 268 47.4
C06p07660 Brassica napus HOM05D003453 ORTHO05D042108 1.5e-15 88.2 55 87.3
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 3.8e-14 83.6 264 56.1
BolC6t35852H Brassica oleracea HOM05D003453 ORTHO05D042108 4.2e-13 80.1 45 91.1
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 7.4e-10 69.3 116 49.1
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.5e-07 61.6 91 40.7
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 7.7e-07 59.3 121 37.2


User provided reference genes

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