Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 6.8e-50 200.3 96 100.0
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 5.0e-45 184.1 96 89.6
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-43 179.1 98 88.8
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.6e-43 179.1 98 88.8
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-42 175.3 98 85.7
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.5e-33 146.0 95 74.7
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 5.8e-33 144.1 95 74.7
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.9e-31 139.0 96 70.8
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 1.2e-30 136.3 95 73.7
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.5e-30 134.8 95 70.5
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.7e-29 132.5 95 69.5
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 8.6e-29 130.2 96 67.7
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 2.5e-28 128.6 98 66.3
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 3.3e-28 128.3 97 66.0
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 5.6e-28 127.5 96 65.6
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 9.5e-28 126.7 97 67.0
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 2.8e-19 98.6 95 52.6
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.8e-19 98.6 96 52.1
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 6.2e-19 97.4 68 64.7
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.2e-18 94.4 68 64.7
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.8e-18 94.0 68 63.2
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 3.4e-17 91.7 64 65.6
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 5.8e-17 90.9 64 67.2
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 5.8e-17 90.9 64 67.2
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 7.6e-17 90.5 69 56.5
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 9.9e-17 90.1 63 66.7
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 9.9e-17 90.1 63 66.7
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 9.9e-17 90.1 63 66.7
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 9.9e-17 90.1 69 56.5
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.3e-16 89.7 64 62.5
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 2.9e-16 88.6 64 65.6
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 2.9e-16 88.6 64 65.6
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 6.4e-16 87.4 67 62.7
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 3.2e-15 85.1 67 62.7
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-14 82.8 67 61.2
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.6e-14 82.8 64 59.4
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 6.0e-14 80.9 68 54.4
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.0e-13 80.1 62 59.7
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 1.7e-13 79.3 63 61.9
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 2.3e-13 79.0 71 54.9
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 6.6e-13 77.4 64 53.1
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 8.6e-13 77.0 68 54.4
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.5e-12 76.3 69 53.6
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 3.3e-12 75.1 64 51.6
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.6e-12 74.3 68 54.4
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.6e-12 74.3 68 54.4
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 7.3e-12 73.9 59 64.4
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 7.3e-12 73.9 68 55.9
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-11 73.2 68 47.1
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.8e-11 72.0 68 52.9
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 3.6e-11 71.6 68 45.6
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 6.2e-11 70.9 68 44.1
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 6.2e-11 70.9 65 52.3
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 6.2e-11 70.9 68 52.9
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 6.2e-11 70.9 64 54.7
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 8.1e-11 70.5 63 55.6
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 8.1e-11 70.5 70 50.0
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.1e-10 70.1 68 45.6
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-10 70.1 68 45.6
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-10 70.1 68 45.6
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-10 69.7 50 72.0
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-10 69.7 91 39.6
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.4e-10 69.7 91 39.6
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.4e-10 69.7 63 54.0
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.8e-10 69.3 63 54.0
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 2.4e-10 68.9 68 51.5
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 3.1e-10 68.6 91 38.5
BcaC08g43286 Brassica carinata HOM05D004137 ORTHO05D004804 6.8e-10 67.4 44 65.9
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 6.8e-10 67.4 68 42.6
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 6.8e-10 67.4 65 55.4
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-09 66.6 68 42.6
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-09 66.6 68 42.6
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.2e-09 66.6 69 49.3
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.0e-09 65.9 68 42.6
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.0e-09 65.9 89 38.2
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 2.0e-09 65.9 69 44.9
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.0e-09 65.9 76 46.1
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.6e-09 65.5 66 43.9
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 4.4e-09 64.7 62 53.2
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.4e-09 64.7 63 54.0
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.4e-09 64.7 63 54.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 5.8e-09 64.3 87 44.8
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 7.6e-09 63.9 75 46.7
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 7.6e-09 63.9 60 53.3
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 7.6e-09 63.9 63 54.0
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 9.9e-09 63.5 68 47.1
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.3e-08 63.2 63 52.4
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.3e-08 63.2 85 45.9
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.2e-08 62.4 63 52.4
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.2e-08 62.4 68 44.1
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 2.9e-08 62.0 95 36.8
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 3.8e-08 61.6 40 72.5
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 3.8e-08 61.6 68 44.1
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 8.4e-08 60.5 57 49.1
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-07 60.1 68 39.7
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-07 60.1 62 41.9
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-07 60.1 62 41.9
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.1e-07 60.1 62 43.5
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.4e-07 59.7 63 52.4
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.4e-07 59.7 63 52.4
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.4e-07 59.7 62 46.8
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.9e-07 59.3 68 36.8
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.9e-07 59.3 68 36.8
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 2.4e-07 58.9 63 47.6
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.2e-07 58.2 68 47.1
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 5.4e-07 57.8 62 40.3
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 7.1e-07 57.4 53 45.3
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 9.3e-07 57.0 78 42.3
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 9.3e-07 57.0 68 47.1
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 2.1e-06 55.8 62 40.3
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 2.1e-06 55.8 62 40.3
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 2.1e-06 55.8 63 49.2
AL3G25410 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.5e-06 55.1 76 38.2
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 3.5e-06 55.1 80 36.2
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 6.0e-06 54.3 63 41.3
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 7.8e-06 53.9 80 41.2


User provided reference genes

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