Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 2.2e-140 502.3 251 100.0
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.1e-139 500.0 251 99.6
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 4.1e-139 498.0 251 99.2
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 4.1e-139 498.0 251 99.2
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 5.4e-139 497.7 251 99.2
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 5.4e-139 497.7 251 99.2
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 7.0e-139 497.3 251 98.8
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.6e-138 496.1 251 98.4
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 4.5e-138 494.6 251 98.0
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 5.0e-137 491.1 251 96.8
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 8.6e-137 490.3 251 98.0
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 2.1e-135 485.7 249 96.4
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 4.7e-135 484.6 251 95.6
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 4.7e-135 484.6 251 95.6
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.8e-132 475.3 251 94.4
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.8e-131 472.6 256 92.2
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 5.4e-131 471.1 251 92.8
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.1e-126 455.3 298 79.2
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 6.0e-122 441.0 223 97.8
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.0e-121 440.3 250 84.8
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 3.0e-121 438.7 251 84.9
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 6.6e-121 437.6 251 85.7
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 6.6e-121 437.6 250 84.4
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 8.6e-121 437.2 251 84.1
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 8.6e-121 437.2 250 85.6
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 8.6e-121 437.2 250 85.6
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.1e-120 436.8 250 85.6
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.1e-120 436.8 251 84.1
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.5e-120 436.4 250 84.0
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.5e-120 436.4 250 84.0
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.9e-120 436.0 251 83.7
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 3.3e-120 435.3 250 84.4
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 3.3e-120 435.3 250 84.4
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 5.6e-120 434.5 251 82.9
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 5.6e-120 434.5 249 85.1
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 7.3e-120 434.1 250 84.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 9.5e-120 433.7 251 85.3
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.2e-119 433.3 250 83.6
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.2e-119 433.3 249 83.5
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.6e-119 433.0 251 82.5
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 2.1e-119 432.6 251 83.3
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 2.1e-119 432.6 251 83.3
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.1e-119 432.6 251 84.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 2.1e-119 432.6 251 84.9
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.1e-119 432.6 249 83.5
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 2.8e-119 432.2 250 83.2
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.8e-119 432.2 251 82.9
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.8e-119 432.2 251 82.5
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.6e-119 431.8 250 82.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 1.1e-118 430.3 250 83.6
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.1e-118 430.3 249 82.7
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.8e-118 429.5 251 82.5
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.8e-118 429.5 250 83.2
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 6.8e-118 427.6 250 82.8
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 8.9e-118 427.2 259 80.3
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.2e-117 426.8 246 83.3
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.2e-117 426.8 249 82.3
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 1.2e-117 426.8 250 82.4
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.5e-117 426.4 251 81.7
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 2.0e-117 426.0 251 80.9
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.0e-117 426.0 241 86.3
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 2.0e-117 426.0 251 81.7
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 4.4e-117 424.9 251 81.3
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 4.4e-117 424.9 251 83.3
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 4.4e-117 424.9 251 81.3
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 4.4e-117 424.9 241 86.7
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 4.4e-117 424.9 251 81.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 5.8e-117 424.5 251 82.1
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 9.8e-117 423.7 249 81.5
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 9.8e-117 423.7 249 80.3
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 9.8e-117 423.7 250 82.0
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.3e-116 423.3 251 81.3
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-116 423.3 241 86.3
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.7e-116 422.9 251 80.5
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.4e-116 421.0 249 82.3
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 8.3e-116 420.6 249 81.1
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.4e-115 419.9 249 82.3
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 3.2e-115 418.7 240 84.2
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 9.2e-115 417.2 238 89.5
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 9.2e-115 417.2 251 82.9
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.2e-114 416.8 249 82.3
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.6e-114 416.4 270 76.7
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 6.0e-114 414.5 240 83.3
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 7.8e-114 414.1 268 77.2
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 5.6e-112 407.9 296 71.3
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.2e-111 406.8 233 84.5
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.6e-111 406.4 248 79.4
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.1e-111 406.0 235 83.0
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.5e-109 399.8 231 84.4
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 4.9e-108 394.8 251 78.5
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 8.3e-108 394.0 250 78.0
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.3e-108 394.0 244 76.2
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 7.1e-107 391.0 249 75.9
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 7.8e-106 387.5 249 75.1
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 7.8e-106 387.5 240 76.7
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 3.6e-103 378.6 358 57.8
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.4e-101 371.7 255 73.3
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 7.1e-99 364.4 242 73.1
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 9.3e-99 364.0 242 71.1
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.2e-98 363.6 213 83.1
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 3.0e-97 359.0 239 73.2
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.4e-94 349.4 250 69.6
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 3.8e-92 342.0 251 68.9
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.1e-91 340.5 250 70.4
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 7.3e-88 327.8 185 88.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.1e-86 322.4 244 63.1
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.6e-85 319.3 206 75.7
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.6e-85 317.8 194 80.4
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 4.2e-83 312.0 181 80.1
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.5e-80 302.8 324 52.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 4.8e-79 298.5 187 79.1
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.1e-72 277.3 207 67.6
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.8e-71 272.7 240 53.8
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 9.0e-70 267.7 151 86.8
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 1.1e-64 250.8 211 64.5
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.3e-63 247.3 249 50.2
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.2e-61 240.7 152 76.3
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 2.9e-60 236.1 198 62.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 5.3e-54 215.3 251 51.0
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.1e-50 201.8 116 83.6
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 3.0e-49 199.5 100 97.0
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.2e-47 193.4 99 92.9
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 7.0e-46 188.3 113 80.5
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 3.2e-43 179.5 249 43.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 5.7e-40 168.7 101 78.2
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.7e-39 167.2 101 75.2
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.8e-39 165.6 253 35.2
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.1e-34 150.2 158 55.7
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 2.7e-34 149.8 100 71.0
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 2.1e-26 123.6 94 70.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 3.0e-17 93.2 101 49.5
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-15 87.8 61 60.7
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.9e-15 86.7 137 43.1
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 5.4e-14 82.4 55 74.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 2.0e-13 80.5 44 77.3
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 4.0e-09 66.2 56 57.1
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 6.8e-09 65.5 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 2.2e-07 60.5 55 61.8


User provided reference genes

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