Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32638 Brassica carinata HOM05D006917 ORTHO05D008297 1.6e-183 646.0 339 100.0
C07p56030 Brassica napus HOM05D006917 ORTHO05D008297 9.4e-171 603.6 349 93.1
BolC7t46080H Brassica oleracea HOM05D006917 ORTHO05D008297 6.3e-167 590.9 349 91.7
BraA03t14855Z Brassica rapa HOM05D006917 ORTHO05D008297 2.7e-162 575.5 350 88.3
A03p57910 Brassica napus HOM05D006917 ORTHO05D008297 1.4e-158 563.1 349 86.5
Sp7g26170 Schrenkiella parvula HOM05D006917 ORTHO05D008297 6.1e-146 521.2 353 82.4
Thhalv10025608m.g Eutrema salsugineum HOM05D006917 ORTHO05D008297 5.4e-142 508.1 345 80.6
A01p19630 Brassica napus HOM05D006917 ORTHO05D008297 2.9e-140 502.3 351 80.1
AL7G24390 Arabidopsis lyrata HOM05D006917 ORTHO05D008297 4.2e-139 498.4 343 80.5
Carub.0007s1255 Capsella rubella HOM05D006917 ORTHO05D008297 2.1e-138 496.1 352 77.8
BcaNung01588 Brassica carinata HOM05D006917 ORTHO05D008297 4.7e-138 495.0 349 77.9
AT4G28210 Arabidopsis thaliana HOM05D006917 ORTHO05D008297 8.0e-138 494.2 354 78.5
CARHR235920 Cardamine hirsuta HOM05D006917 ORTHO05D008297 1.0e-137 493.8 353 78.5
BraA01t01896Z Brassica rapa HOM05D006917 ORTHO05D008297 9.8e-136 487.3 351 78.6
C01p24650 Brassica napus HOM05D006917 ORTHO05D008297 7.3e-131 471.1 332 79.5
BcaC09g50505 Brassica carinata HOM05D006917 ORTHO05D008297 6.6e-124 448.0 349 74.5
BolC1t02415H Brassica oleracea HOM05D006917 ORTHO05D008297 6.2e-122 441.4 332 76.2
Aa31LG2G22070 Aethionema arabicum HOM05D006917 ORTHO05D008297 5.6e-115 418.3 372 64.8
THA.LOC104825523 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 6.8e-105 384.8 315 67.6
THA.LOC104807893 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 5.4e-102 375.2 279 72.0
Atru.chr6.3069 Acer truncatum HOM05D006917 ORTHO05D008297 2.6e-96 356.3 297 66.3
Eucgr.D00334 Eucalyptus grandis HOM05D006917 ORTHO05D008297 1.7e-92 343.6 267 67.4
Gorai.013G073800 Gossypium raimondii HOM05D006917 ORTHO05D008297 1.7e-92 343.6 268 66.4
Ciclev10015637m.g Citrus clementina HOM05D006917 ORTHO05D008297 6.6e-92 341.7 270 68.5
Cpa.g.sc53.106 Carica papaya HOM05D006917 ORTHO05D008297 1.9e-91 340.1 358 56.1
CANSAT64G1157 Cannabis sativa HOM05D006917 ORTHO05D008297 5.6e-91 338.6 303 61.1
Gohir.A13G056900 Gossypium hirsutum HOM05D006917 ORTHO05D008297 9.6e-91 337.8 355 54.6
CiPaw.03G170000 Carya illinoinensis HOM05D006917 ORTHO05D008297 1.6e-90 337.0 272 65.8
COL.COLO4_13687 Corchorus olitorius HOM05D006917 ORTHO05D008297 1.6e-90 337.0 268 66.4
Manes.13G151300 Manihot esculenta HOM05D006917 ORTHO05D008297 4.8e-90 335.5 273 64.8
Cfa014546 Carpinus fangiana HOM05D006917 ORTHO05D008297 8.1e-90 334.7 272 66.2
Haze_13090 Corylus avellana HOM05D006917 ORTHO05D008297 1.1e-89 334.3 272 66.2
Thecc.02G172300 Theobroma cacao HOM05D006917 ORTHO05D008297 3.1e-89 332.8 269 66.2
Duzib132G0607 Durio zibethinus HOM05D006917 ORTHO05D008297 6.9e-89 331.6 348 54.0
MD09G1093800 Malus domestica HOM05D006917 ORTHO05D008297 5.8e-88 328.6 272 63.6
TWI36G0541 Tripterygium wilfordii HOM05D006917 ORTHO05D008297 7.6e-88 328.2 278 62.6
PGR042G0968 Punica granatum HOM05D006917 ORTHO05D008297 9.9e-88 327.8 286 60.8
Prupe.3G231600 Prunus persica HOM05D006917 ORTHO05D008297 2.2e-87 326.6 336 56.8
RcHm_v2.0_Chr2g0161911 Rosa chinensis HOM05D006917 ORTHO05D008297 1.1e-86 324.3 285 63.5
Gohir.D13G065000 Gossypium hirsutum HOM05D006917 ORTHO05D008297 1.4e-86 323.9 256 64.8
Hma1.2p1_0565F.1_g179500 Hydrangea macrophylla HOM05D006917 ORTHO05D008297 2.1e-85 320.1 284 59.2
QL08p037351 Quercus lobata HOM05D006917 ORTHO05D008297 6.7e-84 315.1 281 60.9
Potri.013G146900 Populus trichocarpa HOM05D006917 ORTHO05D008297 1.5e-83 313.9 340 53.5
Sopen10g004420 Solanum pennellii HOM05D006917 ORTHO05D008297 1.5e-83 313.9 281 58.7
Dinv15489 Davidia involucrata HOM05D006917 ORTHO05D008297 3.3e-83 312.8 340 54.7
Solyc10g008600.3 Solanum lycopersicum HOM05D006917 ORTHO05D008297 4.3e-83 312.4 281 58.0
PGSC0003DMG401021671 Solanum tuberosum HOM05D006917 ORTHO05D008297 5.6e-83 312.0 280 57.9
CSS0047204 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 1.3e-82 310.8 331 53.8
Migut.M00331 Erythranthe guttata HOM05D006917 ORTHO05D008297 3.7e-82 309.3 300 53.0
GSVIVG01030015001 Vitis vinifera HOM05D006917 ORTHO05D008297 8.1e-82 308.1 257 63.4
Lj3g0010136 Lotus japonicus HOM05D006917 ORTHO05D008297 1.4e-81 307.4 331 54.4
ClCG01G000980 Citrullus lanatus HOM05D006917 ORTHO05D008297 2.4e-81 306.6 273 58.2
VMungo1127G0570 Vigna mungo HOM05D006917 ORTHO05D008297 5.3e-81 305.4 339 53.4
FvH4_6g44760 Fragaria vesca HOM05D006917 ORTHO05D008297 6.9e-81 305.1 298 57.4
FAN14G5902 Fragaria x ananassa HOM05D006917 ORTHO05D008297 1.5e-80 303.9 298 57.4
Peaxi162Scf00608g00317 Petunia axillaris HOM05D006917 ORTHO05D008297 2.0e-80 303.5 277 60.3
Cc05_g06310 Coffea canephora HOM05D006917 ORTHO05D008297 3.4e-80 302.8 255 60.4
Phvul.011G111800 Phaseolus vulgaris HOM05D006917 ORTHO05D008297 3.4e-80 302.8 335 52.8
CSS0012077 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 5.8e-80 302.0 331 52.9
FAN02G4118 Fragaria x ananassa HOM05D006917 ORTHO05D008297 9.9e-80 301.2 272 61.0
FAN09G3443 Fragaria x ananassa HOM05D006917 ORTHO05D008297 2.2e-79 300.1 272 60.7
FAN05G2664 Fragaria x ananassa HOM05D006917 ORTHO05D008297 4.9e-79 298.9 272 60.7
Sabra13G0118400 Salix brachista HOM05D006917 ORTHO05D008297 8.4e-79 298.1 263 60.8
Sed0009072 Sechium edule HOM05D006917 ORTHO05D008297 8.4e-79 298.1 353 50.4
Ca_20697_v3 Cicer arietinum L. HOM05D006917 ORTHO05D008297 5.5e-78 295.4 315 54.6
Lalb_Chr19g0135451 Lupinus albus HOM05D006917 ORTHO05D008297 1.6e-77 293.9 286 54.2
Nn1g03886 Nelumbo nucifera HOM05D006917 ORTHO05D008297 1.6e-77 293.9 267 59.2
arahy.Tifrunner.gnm1.ann1.RY5XZD Arachis hypogaea HOM05D006917 ORTHO05D008297 4.6e-77 292.4 268 58.6
DCAR_009726 Daucus carota HOM05D006917 ORTHO05D008297 6.0e-77 292.0 281 57.7
HanXRQChr06g0170991 Helianthus annuus HOM05D006917 ORTHO05D008297 7.9e-77 291.6 309 52.8
MELO3C005833.2 Cucumis melo HOM05D006917 ORTHO05D008297 1.3e-76 290.8 271 56.5
Glyma.06G298100 Glycine max HOM05D006917 ORTHO05D008297 1.3e-76 290.8 332 51.8
Lsat_1_v5_gn_3_39800 Lactuca sativa HOM05D006917 ORTHO05D008297 1.3e-76 290.8 337 50.4
arahy.Tifrunner.gnm1.ann1.43ZBCD Arachis hypogaea HOM05D006917 ORTHO05D008297 1.8e-76 290.4 268 57.5
Psat7g195960 Pisum sativum HOM05D006917 ORTHO05D008297 2.3e-76 290.0 308 54.5
Lalb_Chr03g0029201 Lupinus albus HOM05D006917 ORTHO05D008297 5.1e-76 288.9 267 56.9
AUR62044684 Chenopodium quinoa HOM05D006917 ORTHO05D008297 1.1e-75 287.7 272 55.9
HPP92_002192 Vanilla planifolia HOM05D006917 ORTHO05D008297 1.5e-75 287.3 312 50.6
Glyma.12G107100 Glycine max HOM05D006917 ORTHO05D008297 4.3e-75 285.8 331 52.3
Medtr4g046023 Medicago truncatula HOM05D006917 ORTHO05D008297 1.6e-74 283.9 268 58.2
CsaV3_5G001130 Cucumis sativus L. HOM05D006917 ORTHO05D008297 2.8e-74 283.1 269 56.9
ECA246G1823 Erigeron canadensis HOM05D006917 ORTHO05D008297 3.7e-74 282.7 266 57.5
SGA_v2.0_scaffold70G23465 Striga asiatica HOM05D006917 ORTHO05D008297 3.7e-74 282.7 340 49.7
MSTRG.18638 Avicennia marina HOM05D006917 ORTHO05D008297 8.2e-74 281.6 273 54.9
EL10Ac9g22343 Beta vulgaris HOM05D006917 ORTHO05D008297 1.4e-73 280.8 275 55.3
TPR.G21667 Trifolium pratense HOM05D006917 ORTHO05D008297 1.4e-73 280.8 344 49.1
PSO832G2257 Papaver somniferum HOM05D006917 ORTHO05D008297 6.9e-73 278.5 307 52.1
SalBow7G0082 Salvia bowleyana HOM05D006917 ORTHO05D008297 6.9e-73 278.5 380 45.3
Ah.04g154320 Amaranthus hybridus HOM05D006917 ORTHO05D008297 3.4e-72 276.2 270 54.4
PSO210G6334 Papaver somniferum HOM05D006917 ORTHO05D008297 3.4e-72 276.2 306 51.3
MBI19_g29221_MAGBIO Magnolia biondii HOM05D006917 ORTHO05D008297 1.3e-71 274.2 260 54.2
AUR62037382 Chenopodium quinoa HOM05D006917 ORTHO05D008297 1.7e-71 273.9 271 55.0
Sc21g0002460 Simmondsia chinensis HOM05D006917 ORTHO05D008297 4.2e-70 269.2 326 46.6
Actinidia30487 Actinidia chinensis HOM05D006917 ORTHO05D008297 5.5e-70 268.9 274 52.6
Aqoxy3G03605 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 2.1e-69 266.9 278 52.2
CDE12G0159 Ceratophyllum demersum HOM05D006917 ORTHO05D008297 7.9e-69 265.0 341 44.6
Hund08056 Selenicereus undatus HOM05D006917 ORTHO05D008297 1.3e-68 264.2 280 51.1
unitig_746.g26713 Utricularia gibba HOM05D006917 ORTHO05D008297 8.7e-68 261.5 360 43.6
Nitab4.5_0003195g0010 Nicotiana tabacum HOM05D006917 ORTHO05D008297 1.5e-64 250.8 231 56.3
Lj8P117T42 Lonicera japonica HOM05D006917 ORTHO05D008297 3.4e-64 249.6 234 56.0
Nitab4.5_0000635g0150 Nicotiana tabacum HOM05D006917 ORTHO05D008297 6.5e-63 245.4 271 50.6
PGSC0003DMG400029584 Solanum tuberosum HOM05D006917 ORTHO05D008297 3.2e-62 243.0 205 58.5
TAR629G2913 Trochodendron aralioides HOM05D006917 ORTHO05D008297 6.5e-55 218.8 293 45.7
MD17G1083500 Malus domestica HOM05D006917 ORTHO05D008297 1.0e-47 194.9 218 51.8
ATR0693G234 Amborella trichopoda HOM05D006917 ORTHO05D008297 2.9e-47 193.4 233 46.8
arahy.Tifrunner.gnm1.ann1.C6FW5S Arachis hypogaea HOM05D006917 ORTHO05D008297 1.4e-36 157.9 162 53.7
arahy.Tifrunner.gnm1.ann1.29DNDL Arachis hypogaea HOM05D006917 ORTHO05D008297 6.3e-26 122.5 136 52.2
SEGI_04255 Sequoiadendron giganteum HOM05D006917 ORTHO05D008297 7.0e-25 119.0 357 31.4
MD17G1083600 Malus domestica HOM05D006917 ORTHO05D008297 5.4e-17 92.8 75 64.0
SEGI_37556 Sequoiadendron giganteum HOM05D006917 ORTHO05D008297 1.6e-16 91.3 188 36.7
AagrBONN_evm.TU.Sc2ySwM_228.5823 Anthoceros agrestis HOM05D006917 ORTHO05D008297 3.5e-16 90.1 278 27.0
Oeu039864.1 Olea europaea HOM05D006917 ORTHO05D008297 2.4e-09 67.4 72 48.6
Cpa.g.sc609.4 Carica papaya HOM05D006917 ORTHO05D008297 7.0e-09 65.9 81 45.7
ATR0693G306 Amborella trichopoda HOM05D006917 ORTHO05D008297 9.2e-09 65.5 72 51.4
Pp3c2_31610 Physcomitrium patens HOM05D037891 ORTHO05D008297 4.6e-08 63.2 277 22.0
Aqoxy3G03603 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 4.3e-06 56.6 93 43.0


User provided reference genes

Program Settings