Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 3.3e-239 831.2 403 100.0
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 3.8e-227 791.2 395 97.5
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 9.0e-221 770.0 395 95.4
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 2.8e-214 748.4 395 94.2
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 8.1e-214 746.9 395 93.9
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.8e-197 692.6 394 87.3
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 2.5e-178 629.0 405 77.8
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.5e-178 629.0 408 78.9
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 5.5e-178 627.9 401 80.0
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 4.7e-177 624.8 401 79.6
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.2e-175 620.2 406 76.1
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-172 610.1 402 77.9
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 3.5e-172 608.6 402 79.1
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 7.7e-172 607.4 407 75.2
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.0e-171 607.1 401 78.1
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 5.5e-170 601.3 404 77.2
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 2.0e-164 582.8 408 74.3
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 5.0e-147 525.0 405 65.7
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 5.4e-141 505.0 407 66.3
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 3.5e-116 422.5 416 52.6
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.3e-115 420.6 416 52.9
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 6.2e-113 411.8 405 53.8
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 2.4e-112 409.8 405 53.1
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.2e-111 407.5 406 53.9
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.2e-111 407.5 405 52.8
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.2e-111 407.5 405 52.8
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.2e-110 403.3 447 48.8
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.9e-109 400.2 405 53.8
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.2e-108 397.5 417 50.1
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.2e-108 397.5 423 49.4
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.1e-108 396.7 430 50.0
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 1.5e-106 390.6 409 50.6
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 2.5e-106 389.8 408 50.0
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 3.3e-106 389.4 407 52.1
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.3e-106 389.4 412 49.5
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 5.6e-106 388.7 422 50.5
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 7.4e-106 388.3 425 49.2
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.6e-105 387.1 418 48.8
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.1e-105 386.7 385 51.9
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.1e-105 386.7 425 49.2
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 2.1e-105 386.7 412 50.2
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 2.1e-105 386.7 425 50.4
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 2.8e-105 386.3 406 51.5
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.1e-104 384.4 410 49.3
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 1.4e-104 384.0 415 49.4
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.4e-104 383.3 415 49.4
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.1e-104 382.9 408 51.0
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 6.9e-104 381.7 395 50.4
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.2e-103 380.9 425 49.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.2e-103 380.9 409 49.4
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 3.4e-103 379.4 432 48.4
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-102 377.5 441 49.0
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-102 377.5 441 49.0
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 2.2e-102 376.7 404 48.0
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 4.9e-102 375.6 406 49.0
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.1e-101 374.4 406 49.3
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.1e-101 374.4 401 51.4
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.1e-101 374.4 401 51.1
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.4e-101 374.0 428 46.0
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 4.2e-101 372.5 423 48.7
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 5.5e-101 372.1 411 49.1
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.1e-100 370.2 434 46.5
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 2.7e-100 369.8 413 48.9
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.7e-100 369.8 378 52.1
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 3.5e-100 369.4 376 54.5
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 6.0e-100 368.6 385 50.4
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.0e-99 367.9 408 49.8
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.8e-99 367.1 385 49.9
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 2.3e-99 366.7 409 48.9
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.0e-99 366.3 448 46.2
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.1e-98 364.4 416 45.9
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.9e-98 363.6 413 47.2
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.5e-98 363.2 402 50.0
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 7.4e-98 361.7 415 46.3
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.3e-97 360.9 424 45.5
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.6e-97 360.5 384 50.3
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.1e-96 357.8 423 46.3
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.8e-96 357.1 399 48.9
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.7e-94 350.5 385 50.1
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.7e-94 350.5 402 46.8
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.2e-94 350.1 407 46.2
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.5e-93 346.7 407 46.9
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 4.2e-93 345.9 405 46.4
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 4.2e-93 345.9 403 47.1
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 5.5e-93 345.5 399 47.4
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 5.5e-93 345.5 410 46.8
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 7.1e-93 345.1 421 44.9
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.6e-92 344.0 400 45.0
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.3e-91 340.1 399 47.4
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 5.1e-91 339.0 442 44.6
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 7.4e-90 335.1 386 43.8
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.3e-89 334.3 381 43.3
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 3.7e-89 332.8 389 44.7
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 4.8e-89 332.4 387 46.3
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.8e-88 330.5 391 48.8
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.4e-88 330.1 409 44.7
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 4.1e-88 329.3 402 43.3
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 5.9e-87 325.5 405 45.4
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.8e-86 322.8 415 43.9
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 2.7e-84 316.6 398 41.5
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.9e-82 310.5 386 44.0
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.4e-80 304.3 386 46.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 9.1e-80 301.6 432 39.6
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.0e-78 298.1 420 41.2
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-77 294.7 383 42.3
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.4e-77 294.3 393 38.9
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 9.4e-77 291.6 410 37.8
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.0e-75 288.1 400 39.8
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 6.7e-75 285.4 399 39.8
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.7e-73 280.8 361 42.4
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.8e-73 280.0 392 40.3
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.7e-73 279.6 396 40.4
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.0e-70 271.6 378 39.4
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 2.0e-66 257.3 405 37.0
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.4e-66 256.1 363 40.5
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.3e-65 254.6 405 37.0
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.3e-65 254.6 405 36.8
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 7.2e-61 238.8 428 33.9
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 8.0e-60 235.3 437 34.3
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.8e-57 226.9 399 34.3
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-51 206.8 379 33.5
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.4e-50 203.0 357 34.2
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.5e-50 202.2 357 33.6
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.7e-49 199.9 379 32.7
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.5e-46 189.1 392 32.4
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.9e-37 161.0 220 39.5
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-37 160.6 328 32.0
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-37 160.6 328 32.0
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 4.7e-36 156.4 145 55.9
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.7e-31 140.6 405 26.9
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.7e-31 140.6 405 26.9
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.9e-30 136.7 422 27.0
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.6e-28 130.2 397 26.4
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.1e-27 128.6 171 41.5
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.5e-26 124.8 386 27.7
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.4e-26 123.2 102 52.9
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.0e-22 109.8 259 29.7
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.1e-21 108.6 188 33.5
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.2e-20 105.1 371 22.6
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 7.5e-18 95.9 387 24.5
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.1e-16 92.0 68 55.9
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.9e-16 91.3 383 27.2
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 9.2e-16 89.0 372 23.4
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-13 81.6 292 28.1
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 5.6e-13 79.7 107 36.4
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.6e-12 78.2 209 30.1
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.4e-11 74.3 194 26.3
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 2.6e-10 70.9 210 27.6
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-10 70.9 62 53.2
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 3.4e-10 70.5 210 27.6
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.4e-08 64.3 63 39.7
BcaC07g38319 Brassica carinata HOM05D001805 ORTHO05D001734 7.1e-08 62.8 38 73.7


User provided reference genes

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