Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.0e-302 1041.6 506 100.0
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 3.0e-266 921.4 503 89.9
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 4.0e-266 921.0 504 89.9
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-262 909.4 503 89.5
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 3.5e-262 907.9 502 89.4
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 4.0e-242 841.3 515 81.6
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 5.8e-241 837.4 506 82.4
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 2.2e-240 835.5 506 82.2
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-236 823.2 506 80.8
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 2.3e-234 815.5 515 78.6
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.5e-233 812.8 506 80.4
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 4.4e-233 811.2 511 79.8
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 9.8e-233 810.1 518 78.0
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.2e-227 793.1 518 76.6
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 6.2e-227 790.8 510 79.2
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 4.0e-226 788.1 515 76.7
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.1e-196 690.3 394 87.3
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 3.1e-194 682.2 520 65.4
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 9.3e-183 644.0 525 64.4
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 7.7e-145 518.1 527 51.0
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 4.2e-143 512.3 525 50.7
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.1e-142 510.0 534 50.6
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 3.0e-141 506.1 552 48.4
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 4.4e-140 502.3 516 51.9
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.8e-140 501.1 503 52.1
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 9.8e-140 501.1 503 52.1
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 8.3e-139 498.0 503 51.9
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.1e-138 497.7 521 48.6
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 3.1e-138 496.1 512 50.8
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 5.4e-138 495.4 518 51.0
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.5e-137 492.3 549 49.2
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.5e-137 492.3 549 49.2
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 5.9e-137 491.9 517 49.5
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.0e-136 491.1 511 49.3
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.3e-136 490.0 523 49.9
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.3e-135 486.1 528 49.4
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 5.6e-135 485.3 514 51.8
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 9.5e-135 484.6 521 47.6
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.8e-134 483.0 516 48.8
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 3.6e-134 482.6 510 49.8
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 6.1e-134 481.9 537 47.5
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 8.0e-134 481.5 536 47.2
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.4e-133 480.7 524 48.7
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 4.0e-133 479.2 506 48.4
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.2e-132 477.6 525 49.0
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 7.5e-132 474.9 517 48.9
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 9.8e-132 474.6 513 49.9
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.7e-131 472.6 519 48.2
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.7e-131 472.6 515 49.1
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 8.3e-131 471.5 519 48.7
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-130 470.7 550 47.6
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.4e-130 470.7 505 47.3
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.2e-130 469.5 554 46.8
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 7.0e-130 468.4 547 47.2
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.2e-129 467.6 523 48.6
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 2.0e-129 466.8 519 48.0
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.7e-129 466.5 535 47.1
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 3.5e-129 466.1 529 47.8
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.0e-128 464.5 529 48.4
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 5.0e-128 462.2 521 47.0
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 6.6e-128 461.8 532 47.0
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.5e-127 459.9 525 47.8
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 4.3e-127 459.1 504 48.2
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 5.6e-127 458.8 524 45.8
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 2.8e-126 456.4 507 46.9
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 2.8e-126 456.4 554 44.6
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 3.6e-126 456.1 506 47.8
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 8.0e-126 454.9 527 47.6
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 2.6e-124 449.9 553 43.0
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 4.4e-124 449.1 521 46.4
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.2e-123 446.8 516 46.7
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.2e-123 446.8 545 45.3
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.2e-123 446.8 517 45.5
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.4e-122 444.1 506 45.7
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.9e-122 443.7 549 45.4
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 4.1e-122 442.6 508 46.1
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 4.1e-122 442.6 516 45.3
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.0e-121 440.3 509 47.5
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 6.0e-121 438.7 510 45.9
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 7.8e-121 438.3 534 44.9
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 1.0e-120 438.0 509 46.4
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.0e-120 438.0 511 44.0
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.3e-120 437.6 542 44.8
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 1.3e-120 437.6 518 45.8
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.5e-119 434.1 518 45.4
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.5e-119 434.1 519 45.5
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 7.3e-119 431.8 511 46.4
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.2e-118 431.0 465 48.2
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 4.0e-117 426.0 498 44.4
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 8.9e-117 424.9 515 45.2
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.7e-115 420.6 513 46.8
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 6.4e-115 418.7 521 44.0
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 7.1e-114 415.2 494 43.5
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.7e-113 413.3 544 43.4
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 6.6e-112 408.7 497 43.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 6.2e-110 402.1 554 40.1
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.0e-109 399.4 545 41.3
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 3.2e-106 389.8 521 42.4
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.2e-105 387.9 511 44.0
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.6e-105 386.0 497 45.1
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.3e-104 384.4 514 41.2
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.5e-100 370.9 509 41.8
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 7.6e-100 368.6 466 45.5
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 7.6e-100 368.6 514 41.8
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 4.9e-99 365.9 469 42.4
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.2e-97 361.3 502 39.6
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 8.7e-96 355.1 512 39.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.1e-95 354.8 510 39.0
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 9.6e-95 351.7 514 39.1
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-92 344.0 476 39.9
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 4.4e-92 342.8 496 38.9
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 2.2e-91 340.5 514 40.5
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.2e-91 340.5 520 40.6
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.4e-90 337.8 525 38.9
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 4.6e-89 332.8 524 38.0
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.1e-82 311.6 494 37.0
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.6e-81 307.8 522 37.0
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.5e-81 306.6 471 37.6
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 8.1e-78 295.4 559 34.5
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.1e-77 295.0 476 36.8
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.1e-74 282.3 496 33.5
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.7e-71 272.7 492 32.7
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.9e-67 260.4 514 34.2
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-66 258.1 462 34.2
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-66 257.3 463 33.5
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.9e-57 225.7 452 31.4
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.9e-57 225.7 452 31.4
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 3.6e-49 200.3 495 29.5
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.4e-48 198.4 262 40.8
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-44 184.1 373 32.7
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 8.5e-43 179.1 540 27.6
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.3e-38 165.2 306 35.6
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.3e-38 165.2 534 26.2
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.1e-37 162.2 510 26.9
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 7.7e-36 156.0 172 45.3
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 2.7e-33 147.5 144 47.2
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.0e-33 146.0 147 50.3
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.4e-32 145.2 459 26.4
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 4.5e-28 130.2 437 23.6
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.5e-28 130.2 408 26.2
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 3.2e-26 124.0 481 25.2
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 4.1e-21 107.1 497 24.7
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.1e-18 99.0 382 27.7
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.5e-18 98.6 416 22.6
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.2e-17 95.5 79 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.7e-11 75.1 121 31.4
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 2.3e-11 74.7 89 41.6
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.5e-10 72.0 92 40.2
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.5e-10 72.0 69 44.9
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.3e-10 70.5 281 26.0
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 9.5e-10 69.3 59 52.5
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-09 68.6 62 53.2
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 6.2e-09 66.6 55 49.1
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.0e-08 65.9 64 40.6
BcaC07g38319 Brassica carinata HOM05D001805 ORTHO05D001734 8.3e-06 56.2 34 76.5


User provided reference genes

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