Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-101 372.5 189 100.0
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-101 372.5 189 100.0
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 2.6e-61 239.2 199 73.4
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 3.4e-61 238.8 206 70.4
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.2e-60 236.1 206 69.9
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 6.4e-60 234.6 207 67.6
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 7.0e-59 231.1 208 67.3
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.1e-58 229.6 202 69.8
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.1e-58 229.6 202 69.8
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.0e-57 227.3 209 66.5
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.0e-57 227.3 209 66.5
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 6.6e-57 224.6 170 75.3
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.3e-56 221.9 202 64.9
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 4.3e-56 221.9 203 65.5
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.2e-55 220.3 207 63.8
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.2e-55 220.3 192 68.8
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 3.6e-55 218.8 190 68.9
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.1e-54 215.7 209 65.6
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 2.9e-52 209.1 193 66.3
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.7e-52 208.8 195 63.6
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 3.7e-52 208.8 189 67.2
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 4.9e-52 208.4 193 66.3
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.9e-51 206.5 201 63.2
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.6e-50 203.4 202 61.4
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 9.5e-48 194.1 204 59.8
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 6.8e-46 188.0 203 59.1
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.3e-36 157.1 190 55.3
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 7.1e-35 151.4 201 47.3
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.1e-32 144.1 224 44.2
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.3e-32 142.1 225 44.0
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 4.3e-32 142.1 216 42.1
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 4.3e-32 142.1 165 46.7
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 7.3e-32 141.4 213 44.1
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.2e-31 138.3 223 41.3
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.2e-31 138.3 223 41.3
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.4e-30 137.1 217 41.9
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 1.4e-30 137.1 221 43.0
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 9.0e-30 134.4 188 45.7
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 2.6e-29 132.9 212 40.6
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 3.4e-29 132.5 227 40.5
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 5.8e-29 131.7 227 41.0
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 9.9e-29 131.0 219 39.7
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 9.9e-29 131.0 205 41.0
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.2e-28 129.8 196 43.9
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.2e-28 129.8 164 47.0
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 2.2e-28 129.8 189 40.2
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 2.9e-28 129.4 156 46.8
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 2.9e-28 129.4 208 40.9
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 3.8e-28 129.0 179 40.2
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.1e-27 127.5 221 39.8
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.4e-27 126.3 195 44.1
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 2.4e-27 126.3 208 41.3
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 3.2e-27 125.9 213 41.8
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.2e-27 125.6 200 43.0
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 5.4e-27 125.2 212 41.0
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.2e-26 124.0 220 41.8
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 2.1e-26 123.2 150 46.0
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 4.6e-26 122.1 205 42.0
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 7.9e-26 121.3 206 38.8
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.3e-25 120.6 245 37.1
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 2.3e-25 119.8 159 42.1
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.3e-25 119.8 177 44.6
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 3.9e-25 119.0 177 44.6
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 3.9e-25 119.0 181 40.9
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 6.7e-25 118.2 218 39.9
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 6.7e-25 118.2 210 41.0
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.1e-24 117.5 182 44.5
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.9e-24 116.7 174 44.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.9e-24 116.7 205 39.0
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.9e-24 116.7 219 40.6
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 3.3e-24 115.9 163 43.6
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 4.3e-24 115.5 184 41.8
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 4.3e-24 115.5 226 39.8
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 4.3e-24 115.5 177 41.2
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.6e-24 115.2 138 45.7
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 7.4e-24 114.8 199 38.7
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 9.6e-24 114.4 177 44.1
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.6e-23 113.6 217 40.1
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 2.1e-23 113.2 226 37.2
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.8e-23 112.8 225 36.9
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 2.8e-23 112.8 222 36.0
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 4.8e-23 112.1 174 40.2
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 6.2e-23 111.7 95 58.9
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.2e-23 111.7 210 39.5
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 8.1e-23 111.3 174 40.2
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.4e-22 110.5 218 36.7
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 1.8e-22 110.2 160 43.1
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 2.4e-22 109.8 72 65.3
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 2.4e-22 109.8 166 45.2
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.4e-22 109.8 130 46.9
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.4e-22 109.8 75 66.7
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 2.4e-22 109.8 159 41.5
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 3.1e-22 109.4 191 38.7
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 4.0e-22 109.0 181 39.2
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 4.0e-22 109.0 138 44.2
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 5.3e-22 108.6 91 59.3
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 9.0e-22 107.8 168 39.3
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.5e-21 107.1 226 36.7
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 5.8e-21 105.1 194 36.6
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 5.8e-21 105.1 179 39.7
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 7.6e-21 104.8 117 49.6
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 7.6e-21 104.8 108 52.8
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 7.6e-21 104.8 179 37.4
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 9.9e-21 104.4 114 46.5
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.7e-20 103.6 229 34.1
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 2.2e-20 103.2 220 36.4
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 2.2e-20 103.2 225 35.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.2e-20 103.2 202 39.1
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.9e-20 102.1 222 34.7
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 4.9e-20 102.1 215 35.3
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 4.9e-20 102.1 182 38.5
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 4.9e-20 102.1 175 40.6
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 6.4e-20 101.7 76 60.5
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.4e-19 100.5 219 35.2
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.9e-19 100.1 222 34.2
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 3.2e-19 99.4 217 34.1
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 3.2e-19 99.4 215 36.7
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 4.2e-19 99.0 68 64.7
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 5.5e-19 98.6 158 38.0
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 7.1e-19 98.2 187 37.4
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 7.1e-19 98.2 73 58.9
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 7.1e-19 98.2 98 53.1
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 2.1e-18 96.7 201 36.8
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 3.5e-18 95.9 73 56.2
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 3.5e-18 95.9 236 33.5
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.0e-17 94.4 208 35.1
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.3e-17 93.2 82 54.9
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 3.0e-17 92.8 227 34.8
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 8.7e-17 91.3 187 36.4
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 8.7e-17 91.3 99 50.5
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 8.7e-17 91.3 97 48.5
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 1.1e-16 90.9 82 53.7
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 4.3e-16 89.0 103 43.7
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 9.6e-16 87.8 85 48.2
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.1e-15 86.7 111 52.3
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 2.8e-15 86.3 156 33.3
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 5.3e-14 82.0 202 31.2
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 1.5e-13 80.5 97 55.7
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.4e-13 79.3 105 49.5
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 3.4e-13 79.3 183 37.2
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 2.9e-12 76.3 88 59.1
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 3.8e-12 75.9 105 48.6
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 6.5e-12 75.1 102 49.0
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 4.2e-11 72.4 183 33.3
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.7e-10 69.7 75 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 3.5e-10 69.3 104 38.5
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 3.5e-10 69.3 70 58.6
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.0e-09 67.8 75 45.3
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 2.3e-09 66.6 134 34.3
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 3.3e-08 62.8 77 53.2


User provided reference genes

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