Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-114 416.0 209 100.0
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.5e-110 402.9 209 95.7
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 2.6e-110 402.1 209 95.7
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 4.4e-110 401.4 209 95.2
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 4.4e-110 401.4 209 95.2
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 7.4e-110 400.6 209 94.3
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 7.4e-110 400.6 209 95.2
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 1.3e-109 399.8 209 94.3
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 1.3e-109 399.8 209 94.3
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 8.2e-109 397.1 209 93.8
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 3.1e-108 395.2 208 93.3
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 4.1e-108 394.8 209 93.8
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 9.1e-108 393.7 209 93.3
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 4.5e-107 391.3 206 94.2
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.3e-106 389.8 209 91.4
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.3e-106 389.8 206 93.7
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.9e-106 388.7 204 93.6
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.2e-96 356.7 205 84.4
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 8.3e-93 344.0 208 80.3
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 4.1e-92 341.7 208 78.8
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 4.5e-91 338.2 206 78.2
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.0e-90 337.0 205 79.5
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 1.0e-90 337.0 206 77.7
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.7e-90 336.3 208 77.4
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.7e-90 336.3 206 77.7
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 2.9e-90 335.5 206 78.2
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 2.9e-90 335.5 206 77.7
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 3.8e-90 335.1 209 76.6
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 5.0e-90 334.7 205 79.0
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 5.0e-90 334.7 205 79.0
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 8.5e-90 334.0 206 78.2
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 8.5e-90 334.0 206 78.2
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 8.5e-90 334.0 206 77.2
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 77.6
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.2e-89 332.0 206 76.2
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 3.2e-89 332.0 206 76.2
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 4.2e-89 331.6 206 77.7
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 4.2e-89 331.6 205 77.1
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 5.5e-89 331.3 206 77.2
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 5.5e-89 331.3 208 74.0
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 7.2e-89 330.9 208 76.4
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 7.2e-89 330.9 205 76.6
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 9.4e-89 330.5 206 77.7
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 9.4e-89 330.5 206 77.7
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.2e-88 330.1 205 78.0
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.2e-88 330.1 208 76.0
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.2e-88 330.1 205 77.1
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 2.7e-88 328.9 206 75.7
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 3.6e-88 328.6 205 74.6
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 6.1e-88 327.8 208 73.6
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 8.0e-88 327.4 205 75.1
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.0e-87 327.0 205 74.6
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.0e-87 327.0 206 76.7
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 1.0e-87 327.0 205 76.1
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 1.0e-87 327.0 206 76.7
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.4e-87 326.6 206 76.2
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 2.3e-87 325.9 208 72.6
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 2.3e-87 325.9 206 75.7
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 3.0e-87 325.5 209 74.2
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 4.0e-87 325.1 206 76.7
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 5.2e-87 324.7 206 74.3
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 5.2e-87 324.7 208 74.0
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 5.2e-87 324.7 206 75.7
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 8.8e-87 323.9 206 79.6
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.2e-86 323.6 208 74.0
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.2e-86 323.6 206 73.8
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.5e-86 323.2 207 74.4
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 2.0e-86 322.8 206 75.2
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 2.0e-86 322.8 211 73.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.6e-86 322.4 206 73.8
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 2.6e-86 322.4 206 73.8
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.4e-86 322.0 206 74.8
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 3.4e-86 322.0 206 73.8
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 7.5e-86 320.9 212 75.0
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 9.8e-86 320.5 206 74.3
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 9.8e-86 320.5 205 72.7
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 8.3e-85 317.4 205 74.1
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 8.3e-85 317.4 206 75.2
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.1e-84 317.0 227 69.6
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.1e-84 317.0 205 74.6
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.4e-84 315.8 205 72.2
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 2.4e-84 315.8 205 73.2
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 4.1e-84 315.1 215 70.2
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 2.0e-83 312.8 205 75.6
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 7.7e-83 310.8 205 72.2
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 7.2e-81 304.3 203 71.4
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 7.2e-81 304.3 210 70.5
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.6e-80 302.0 209 69.9
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 6.1e-80 301.2 186 75.3
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.8e-79 299.7 207 69.1
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.2e-78 297.0 203 72.4
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 2.2e-77 292.7 210 67.6
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 3.7e-77 292.0 178 78.7
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 7.0e-76 287.7 203 68.0
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 5.9e-75 284.6 213 64.3
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.7e-74 283.1 206 69.4
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 2.9e-74 282.3 206 67.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.9e-73 279.6 203 66.5
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 2.5e-73 279.3 208 67.8
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.2e-72 276.9 203 66.0
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.2e-69 266.2 170 75.3
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 6.6e-66 254.6 166 70.5
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 5.6e-65 251.5 170 70.6
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.6e-64 250.0 189 66.1
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 5.2e-63 245.0 159 73.6
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.5e-62 243.4 157 75.2
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 5.8e-62 241.5 250 52.0
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 1.7e-61 240.0 157 74.5
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 3.1e-55 219.2 212 54.2
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 6.8e-55 218.0 133 78.9
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 3.4e-54 215.7 187 57.2
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.5e-49 200.3 208 51.0
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 4.0e-47 192.2 152 63.8
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 6.8e-47 191.4 182 53.8
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 3.2e-44 182.6 123 73.2
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 3.2e-44 182.6 123 73.2
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 5.1e-42 175.3 210 47.1
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 3.6e-40 169.1 142 62.0
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 2.4e-36 156.4 223 40.4
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 2.4e-36 156.4 223 40.4
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 3.0e-34 149.4 95 74.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.9e-28 130.2 196 38.3
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.5e-25 120.6 89 69.7
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.5e-19 99.4 65 67.7
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 5.1e-18 95.5 104 49.0
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 3.7e-16 89.4 53 79.2
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 8.2e-16 88.2 60 68.3
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.8e-15 87.0 52 75.0
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.8e-15 87.0 77 58.4
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 1.4e-12 77.4 65 60.0
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 6.1e-11 72.0 54 64.8
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 1.9e-09 67.0 57 56.1
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.3e-09 66.2 47 68.1
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.2e-08 63.5 39 76.9
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.1e-07 59.7 134 35.1
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 6.9e-07 58.5 39 76.9
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 3.4e-06 56.2 34 79.4


User provided reference genes

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