Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32584 Brassica carinata HOM05D003429 ORTHO05D003873 5.0e-37 157.1 73 100.0
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 3.2e-15 84.7 38 100.0
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 3.2e-15 84.7 38 100.0
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 3.2e-15 84.7 38 100.0
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 7.8e-14 80.1 38 97.4
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 7.8e-14 80.1 38 97.4
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 1.0e-13 79.7 38 92.1
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 1.0e-13 79.7 38 92.1
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 1.0e-13 79.7 38 92.1
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 1.0e-13 79.7 38 92.1
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 1.3e-13 79.3 38 89.5
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 2.3e-13 78.6 38 86.8
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 1.5e-12 75.9 38 89.5
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 2.5e-12 75.1 39 89.7
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 2.5e-12 75.1 39 89.7
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 2.5e-12 75.1 39 89.7
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 2.5e-12 75.1 39 89.7
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 1.0e-10 69.7 38 76.3
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 1.4e-10 69.3 37 78.4
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 8.9e-10 66.6 38 76.3
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 1.2e-09 66.2 38 76.3
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 1.2e-09 66.2 38 76.3
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 1.2e-09 66.2 38 76.3
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.0e-09 65.5 38 73.7
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.0e-09 65.5 38 76.3
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.0e-09 65.5 38 76.3
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 2.6e-09 65.1 38 73.7
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 3.4e-09 64.7 38 73.7
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 3.4e-09 64.7 38 73.7
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 4.4e-09 64.3 38 71.1
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 4.4e-09 64.3 38 73.7
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 5.8e-09 63.9 38 73.7
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 5.8e-09 63.9 38 73.7
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 5.8e-09 63.9 38 71.1
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 5.8e-09 63.9 38 71.1
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 7.5e-09 63.5 38 68.4
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 7.5e-09 63.5 38 71.1
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 7.5e-09 63.5 38 71.1
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 9.8e-09 63.2 38 71.1
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 1.3e-08 62.8 38 73.7
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.7e-08 62.4 38 71.1
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 2.2e-08 62.0 38 71.1
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 2.2e-08 62.0 37 70.3
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 2.9e-08 61.6 38 73.7
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 2.9e-08 61.6 38 65.8
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 2.9e-08 61.6 38 71.1
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 2.9e-08 61.6 38 71.1
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 3.7e-08 61.2 37 70.3
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 3.7e-08 61.2 37 70.3
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 3.7e-08 61.2 37 70.3
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 3.7e-08 61.2 37 70.3
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 3.7e-08 61.2 38 71.1
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 3.7e-08 61.2 37 70.3
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 3.7e-08 61.2 38 68.4
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 3.7e-08 61.2 37 70.3
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 3.7e-08 61.2 38 65.8
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 3.7e-08 61.2 37 70.3
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 3.7e-08 61.2 37 70.3
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 4.9e-08 60.8 64 46.9
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 4.9e-08 60.8 38 71.1
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 4.9e-08 60.8 38 71.1
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 4.9e-08 60.8 38 71.1
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 6.4e-08 60.5 38 68.4
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 6.4e-08 60.5 38 71.1
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 6.4e-08 60.5 38 65.8
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 6.4e-08 60.5 38 65.8
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 8.3e-08 60.1 37 67.6
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 8.3e-08 60.1 38 71.1
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 1.1e-07 59.7 37 67.6
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 1.1e-07 59.7 37 67.6
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 1.1e-07 59.7 37 67.6
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 1.1e-07 59.7 38 68.4
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 1.4e-07 59.3 37 70.3
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.4e-07 59.3 37 70.3
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.4e-07 59.3 37 70.3
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.4e-07 59.3 37 70.3
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.4e-07 59.3 37 70.3
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.4e-07 59.3 37 70.3
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 2.4e-07 58.5 36 69.4
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 2.4e-07 58.5 38 65.8
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 3.2e-07 58.2 37 67.6
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 4.1e-07 57.8 38 71.1
Ca_15294_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 7.0e-07 57.0 37 70.3
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 7.0e-07 57.0 37 64.9
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 7.0e-07 57.0 37 70.3
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 7.0e-07 57.0 42 66.7
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 7.0e-07 57.0 37 70.3
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 7.0e-07 57.0 38 63.2
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.2e-06 56.2 38 71.1
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 1.2e-06 56.2 37 67.6
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.6e-06 55.8 42 66.7
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 1.6e-06 55.8 38 65.8
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 2.0e-06 55.5 38 68.4
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.7e-06 55.1 37 62.2
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.7e-06 55.1 37 62.2
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.7e-06 55.1 37 62.2
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 2.7e-06 55.1 38 68.4
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 3.5e-06 54.7 38 65.8
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 6.0e-06 53.9 42 64.3
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 6.0e-06 53.9 36 66.7
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 6.0e-06 53.9 38 68.4
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 7.8e-06 53.5 38 68.4


User provided reference genes

Program Settings