Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 1.5e-107 392.9 200 100.0
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 7.6e-96 354.0 201 89.6
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 1.0e-95 353.6 201 89.1
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 1.0e-95 353.6 201 89.1
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 1.7e-95 352.8 201 89.1
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 2.9e-95 352.1 201 88.6
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 3.0e-92 342.0 203 86.2
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 1.1e-89 333.6 203 85.7
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 1.0e-87 327.0 200 82.0
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 7.2e-86 320.9 200 81.0
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 9.3e-86 320.5 200 81.5
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.2e-85 320.1 200 80.5
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 4.6e-85 318.2 201 82.1
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.9e-83 312.8 208 78.8
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.8e-73 279.6 157 86.6
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 8.8e-68 260.8 192 69.3
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 2.0e-67 259.6 195 67.2
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 5.7e-67 258.1 192 68.8
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.7e-66 256.5 197 65.0
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.1e-65 253.8 194 64.4
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 1.1e-65 253.8 187 65.8
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 3.1e-65 252.3 200 62.0
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 3.1e-65 252.3 200 62.0
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 3.1e-65 252.3 192 64.1
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 4.1e-65 251.9 175 68.6
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.6e-64 250.0 193 62.7
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.6e-64 250.0 190 64.2
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 2.6e-64 249.2 196 63.8
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 3.5e-64 248.8 197 61.9
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 4.5e-64 248.4 195 65.1
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 5.9e-64 248.1 196 63.8
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 1.0e-63 247.3 196 61.7
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.0e-63 247.3 196 65.3
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.0e-63 247.3 196 61.2
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 1.0e-63 247.3 199 60.8
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 1.0e-63 247.3 187 64.7
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 1.7e-63 246.5 187 64.2
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.7e-63 246.5 190 62.6
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 2.2e-63 246.1 190 64.7
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 2.9e-63 245.7 197 60.9
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 5.0e-63 245.0 190 61.1
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 6.5e-63 244.6 195 64.6
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 8.5e-63 244.2 195 62.1
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 8.5e-63 244.2 198 61.1
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 1.5e-62 243.4 187 65.8
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 1.9e-62 243.0 197 61.9
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 1.9e-62 243.0 187 65.8
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 4.2e-62 241.9 183 63.9
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 5.5e-62 241.5 210 59.0
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 9.4e-62 240.7 200 59.0
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.2e-61 240.4 194 62.4
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 1.6e-61 240.0 193 61.7
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 1.6e-61 240.0 187 65.2
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 3.6e-61 238.8 197 58.9
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 4.7e-61 238.4 209 58.4
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 6.1e-61 238.0 201 58.7
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 8.0e-61 237.7 195 60.5
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 1.0e-60 237.3 195 61.5
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.0e-60 237.3 173 65.9
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 1.4e-60 236.9 215 56.7
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 1.4e-60 236.9 194 58.8
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 1.4e-60 236.9 196 60.7
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 1.4e-60 236.9 196 60.7
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.4e-60 236.9 200 59.0
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 2.3e-60 236.1 175 65.1
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 3.0e-60 235.7 219 55.3
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 4.0e-60 235.3 219 55.7
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 5.2e-60 235.0 195 58.5
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 8.8e-60 234.2 194 59.8
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 1.2e-59 233.8 196 59.7
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 1.5e-59 233.4 197 58.9
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 2.0e-59 233.0 182 61.0
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 4.4e-59 231.9 192 60.9
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 5.7e-59 231.5 191 61.8
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 5.7e-59 231.5 192 59.9
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 7.5e-59 231.1 186 60.8
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 1.7e-58 229.9 192 58.9
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 2.2e-58 229.6 178 62.9
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 2.8e-58 229.2 192 59.4
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 2.8e-58 229.2 196 59.2
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 2.8e-58 229.2 198 56.1
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 4.8e-58 228.4 185 62.2
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 6.3e-58 228.0 178 62.9
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 6.3e-58 228.0 199 57.3
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 6.3e-58 228.0 197 60.4
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 8.2e-58 227.6 195 57.9
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 8.2e-58 227.6 202 57.4
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.1e-57 227.3 178 62.4
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 1.4e-57 226.9 200 57.5
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 3.1e-57 225.7 188 60.1
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 5.3e-57 224.9 178 61.8
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 3.5e-56 222.2 191 60.7
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 5.0e-55 218.4 190 57.4
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 3.2e-54 215.7 191 56.5
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 3.6e-53 212.2 184 60.3
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 4.7e-53 211.8 136 76.5
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 1.8e-49 199.9 183 57.9
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 5.9e-48 194.9 121 74.4
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 3.0e-44 182.6 151 61.6
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.4e-41 172.9 200 47.0
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 5.4e-41 171.8 117 68.4
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 1.6e-40 170.2 142 62.7
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 5.9e-40 168.3 221 43.9
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.1e-38 164.1 184 51.1
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 9.5e-38 161.0 121 69.4
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.6e-37 160.2 107 77.6
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 3.6e-37 159.1 140 57.9
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 1.0e-36 157.5 138 60.1
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.2e-35 154.1 153 52.3
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 7.5e-35 151.4 117 59.8
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 8.3e-34 147.9 117 56.4
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 6.0e-32 141.7 130 53.8
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 1.0e-31 141.0 153 47.7
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.9e-22 110.2 102 56.9
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 4.4e-19 99.0 115 51.3
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.4e-17 94.0 79 57.0
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 5.1e-15 85.5 129 39.5
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.6e-13 80.5 58 69.0
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 4.7e-13 79.0 48 70.8
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 2.1e-08 63.5 84 42.9
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 8.7e-07 58.2 63 49.2
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 1.1e-06 57.8 76 36.8


User provided reference genes

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