Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 9.8e-107 390.2 205 100.0
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 4.9e-82 308.1 207 83.1
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-81 306.6 207 82.6
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.1e-80 302.8 206 81.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 2.7e-80 302.4 212 80.7
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 2.7e-80 302.4 212 80.7
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 3.5e-80 302.0 213 80.3
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 5.6e-78 294.7 211 78.7
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.9e-74 282.3 205 78.0
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.1e-68 263.8 190 78.9
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-68 263.8 214 75.7
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 3.8e-66 255.4 192 75.0
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.5e-43 178.7 198 58.1
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 7.2e-41 171.4 202 55.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.0e-34 151.0 193 51.3
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.7e-34 150.2 194 49.0
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.8e-34 149.1 204 49.0
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 5.0e-34 148.7 193 50.3
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.5e-34 148.3 203 49.8
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.5e-34 148.3 207 51.7
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.1e-33 147.5 209 49.3
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.1e-33 147.5 193 50.3
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-33 147.1 207 50.7
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.5e-33 147.1 205 49.3
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.5e-33 147.1 202 49.0
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.9e-33 146.7 205 49.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.9e-33 146.7 210 48.1
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 4.2e-33 145.6 193 48.7
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 7.2e-33 144.8 207 50.7
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.2e-32 144.1 196 47.4
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-32 144.1 207 51.2
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.1e-32 143.3 197 47.7
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 2.7e-32 142.9 203 51.2
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.7e-32 142.9 203 51.2
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.7e-32 142.9 203 51.2
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.7e-32 142.9 194 50.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.6e-32 142.5 202 48.5
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.0e-31 141.0 196 46.9
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.3e-31 139.8 196 46.4
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 3.0e-31 139.4 202 44.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.2e-30 137.5 203 45.8
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.5e-30 137.1 195 44.1
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.0e-30 136.7 203 46.8
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.6e-30 136.3 200 43.5
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 4.4e-30 135.6 194 46.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.2e-29 133.3 190 42.1
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.8e-29 132.9 193 47.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.8e-29 132.9 196 44.4
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 6.3e-29 131.7 194 47.4
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 6.3e-29 131.7 202 47.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.2e-29 131.3 195 44.1
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 8.2e-29 131.3 193 44.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-28 131.0 200 44.5
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.4e-28 130.6 192 43.8
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.4e-28 129.8 189 42.9
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-28 129.8 194 47.4
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.1e-28 127.9 197 39.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.2e-27 127.5 196 43.9
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.2e-27 127.5 198 42.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.0e-27 126.7 207 44.0
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.7e-27 126.3 196 42.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.5e-27 125.9 187 43.3
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.5e-27 125.9 198 45.5
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.5e-27 125.6 191 46.6
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 5.9e-27 125.2 191 45.5
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.0e-26 124.4 198 42.4
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-26 124.0 194 46.4
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.7e-26 123.6 197 41.1
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.7e-26 123.6 209 42.6
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.2e-26 123.2 194 46.4
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.9e-26 122.9 205 44.4
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.9e-26 122.9 203 44.8
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.5e-25 120.6 128 57.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-25 120.2 188 44.7
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-25 120.2 196 45.4
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 2.5e-25 119.8 207 44.4
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 4.2e-25 119.0 197 44.2
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 5.5e-25 118.6 196 44.9
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.6e-24 117.1 197 43.7
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.1e-24 116.7 189 44.4
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.1e-24 116.7 195 42.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 3.6e-24 115.9 198 44.4
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 3.6e-24 115.9 198 44.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.6e-24 115.9 209 44.0
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 4.7e-24 115.5 201 42.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 8.0e-24 114.8 196 42.3
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 8.0e-24 114.8 204 41.7
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.0e-23 114.4 186 43.5
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.4e-23 114.0 190 43.2
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.4e-23 114.0 199 41.7
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.4e-23 114.0 154 46.1
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.4e-23 114.0 197 42.6
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.4e-23 114.0 207 42.0
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.8e-23 113.6 178 45.5
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 3.0e-23 112.8 230 41.3
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 4.0e-23 112.5 189 45.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 4.0e-23 112.5 187 43.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 4.0e-23 112.5 199 41.7
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 4.0e-23 112.5 191 42.9
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.2e-23 112.1 193 44.6
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 8.8e-23 111.3 191 41.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.2e-22 110.9 209 43.5
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-22 110.5 188 44.7
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.5e-22 110.5 205 41.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.0e-22 110.2 188 42.0
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.0e-22 110.2 189 43.4
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.0e-22 110.2 191 40.8
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.0e-22 110.2 200 40.0
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.0e-22 110.2 202 38.6
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 4.4e-22 109.0 187 41.7
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 4.4e-22 109.0 206 41.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 4.4e-22 109.0 209 42.6
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 4.4e-22 109.0 191 40.8
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 5.7e-22 108.6 149 44.3
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 7.5e-22 108.2 187 41.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.5e-22 108.2 183 40.4
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 9.8e-22 107.8 188 42.0
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.8e-22 107.8 153 44.4
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.7e-21 107.1 207 40.6
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.2e-21 106.7 196 39.8
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-21 106.3 190 43.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.8e-21 106.3 210 42.9
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.8e-21 106.3 136 50.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 6.3e-21 105.1 209 39.2
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 8.3e-21 104.8 185 40.0
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 8.3e-21 104.8 121 54.5
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-20 104.4 203 41.4
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.8e-20 103.6 192 41.1
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.4e-20 103.2 206 39.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 5.4e-20 102.1 209 38.8
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 9.1e-20 101.3 204 39.7
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 9.1e-20 101.3 198 38.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 5.9e-19 98.6 192 34.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 7.7e-19 98.2 205 37.1
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.3e-18 97.4 201 37.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.3e-18 97.4 213 37.6
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.3e-18 97.4 193 36.8
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.1e-17 94.4 208 38.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.1e-17 94.4 202 38.1
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.5e-17 94.0 203 35.5
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 4.2e-17 92.4 205 36.1
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 4.2e-17 92.4 199 40.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 7.2e-17 91.7 202 37.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 9.5e-17 91.3 211 35.5
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.2e-16 90.9 203 37.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-16 90.5 168 37.5
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.6e-16 90.5 199 35.2
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.6e-16 90.5 194 37.6
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.1e-16 90.1 197 37.1
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.8e-16 89.7 198 36.9
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 2.8e-16 89.7 212 36.3
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.6e-16 89.4 197 39.6
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.6e-16 89.4 197 39.6
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 6.1e-16 88.6 203 36.5
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.0e-15 87.8 123 45.5
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.3e-15 86.7 179 39.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 3.0e-15 86.3 147 41.5
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 6.8e-15 85.1 136 44.9
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-14 84.3 199 35.7
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 5.7e-14 82.0 188 34.0
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.8e-13 79.7 141 40.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 3.7e-13 79.3 146 39.7
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 4.9e-13 79.0 196 35.2
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.3e-13 78.2 195 35.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 8.3e-13 78.2 196 35.7
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.1e-12 77.8 201 33.8
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.4e-12 77.4 203 35.5
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.8e-12 77.0 203 35.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.1e-12 76.3 72 66.7
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 4.1e-12 75.9 196 34.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.5e-11 72.8 196 33.7
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.5e-11 72.8 147 36.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.5e-11 72.8 282 30.5
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 4.5e-11 72.4 183 32.2
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.9e-10 69.7 182 30.2
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 5.0e-10 68.9 198 34.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 9.5e-09 64.7 195 32.8
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 8.0e-08 61.6 198 33.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-06 57.8 83 44.6


User provided reference genes

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