Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 2.0e-116 422.5 226 100.0
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 1.2e-108 396.7 226 94.2
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 2.0e-108 396.0 226 93.8
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 2.0e-108 396.0 226 93.8
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 5.8e-108 394.4 226 93.4
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 9.8e-108 393.7 226 93.4
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 5.4e-106 387.9 226 91.6
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 7.0e-106 387.5 226 92.0
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 2.0e-105 386.0 227 91.6
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 1.3e-99 366.7 234 85.0
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 9.2e-98 360.5 205 91.2
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 9.2e-98 360.5 205 91.2
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 9.2e-98 360.5 205 91.2
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 3.3e-95 352.1 236 83.9
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 9.5e-95 350.5 236 82.6
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 8.9e-93 344.0 240 81.2
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 1.2e-92 343.6 237 80.6
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.7e-88 329.7 247 76.9
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 1.6e-81 306.6 225 74.7
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 6.4e-67 258.1 209 67.9
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.8e-64 250.0 228 61.0
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 3.0e-64 249.2 231 61.9
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.5e-63 246.9 227 62.6
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 1.9e-63 246.5 228 60.5
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.9e-63 246.5 207 65.7
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.9e-63 246.5 220 59.5
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 2.5e-63 246.1 226 58.8
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 9.6e-63 244.2 220 61.8
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 9.6e-63 244.2 228 59.6
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 2.1e-62 243.0 213 62.9
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 4.8e-62 241.9 213 61.5
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 6.2e-62 241.5 206 63.1
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 6.2e-62 241.5 201 65.7
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 1.4e-61 240.4 218 62.4
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 1.8e-61 240.0 225 59.6
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 1.8e-61 240.0 207 63.3
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 1.8e-61 240.0 220 60.5
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 2.4e-61 239.6 208 62.5
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.1e-61 239.2 227 58.6
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 5.3e-61 238.4 186 72.0
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 5.3e-61 238.4 223 58.7
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 6.9e-61 238.0 223 62.8
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 6.9e-61 238.0 208 63.5
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 6.9e-61 238.0 211 61.1
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 6.9e-61 238.0 227 58.1
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 6.9e-61 238.0 214 62.1
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 6.9e-61 238.0 201 62.7
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 1.2e-60 237.3 228 60.1
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 1.5e-60 236.9 217 61.3
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 2.0e-60 236.5 215 61.9
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 2.0e-60 236.5 229 56.3
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 2.6e-60 236.1 216 59.7
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 3.4e-60 235.7 223 62.3
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 3.4e-60 235.7 201 66.7
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.4e-60 235.7 229 56.3
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 3.4e-60 235.7 249 57.0
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 3.4e-60 235.7 230 57.0
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 4.5e-60 235.3 205 65.9
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 4.5e-60 235.3 207 63.8
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 2.2e-59 233.0 246 56.5
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 2.9e-59 232.6 229 61.1
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 3.8e-59 232.3 211 58.8
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 3.8e-59 232.3 241 58.1
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 4.9e-59 231.9 227 60.4
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 6.5e-59 231.5 180 73.3
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 6.5e-59 231.5 212 60.8
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 8.4e-59 231.1 241 58.9
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.4e-58 230.3 176 71.0
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.4e-58 230.3 176 71.0
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 1.9e-58 229.9 205 60.0
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 1.9e-58 229.9 185 67.0
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 2.5e-58 229.6 182 65.9
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 3.2e-58 229.2 241 58.1
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 4.2e-58 228.8 226 58.8
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 7.1e-58 228.0 196 63.8
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 9.3e-58 227.6 178 67.4
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 1.6e-57 226.9 211 59.2
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 2.7e-57 226.1 205 60.0
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 6.0e-57 224.9 213 57.3
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 7.9e-57 224.6 226 57.5
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 7.9e-57 224.6 211 60.7
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.3e-56 223.8 226 58.0
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 1.8e-56 223.4 178 66.3
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 3.0e-56 222.6 214 58.9
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 1.5e-55 220.3 207 59.4
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 1.9e-55 219.9 218 57.3
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 2.5e-55 219.5 135 81.5
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 5.7e-55 218.4 228 57.0
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 7.4e-55 218.0 150 74.7
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 7.4e-55 218.0 214 58.4
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.6e-54 216.9 159 70.4
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 1.6e-54 216.9 170 70.0
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 2.4e-53 213.0 182 65.4
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 3.1e-53 212.6 228 53.5
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 4.5e-52 208.8 188 62.2
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 4.5e-52 208.8 229 54.6
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 1.0e-51 207.6 166 69.3
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.3e-51 207.2 227 52.9
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 2.9e-51 206.1 201 57.7
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 1.9e-50 203.4 132 85.6
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 4.2e-50 202.2 198 61.1
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 7.2e-50 201.4 230 56.5
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 6.1e-49 198.4 172 62.2
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 1.3e-48 197.2 104 92.3
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.5e-47 193.7 181 61.9
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.3e-46 190.7 131 74.0
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 3.7e-46 189.1 138 74.6
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.1e-45 187.6 127 72.4
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 2.4e-45 186.4 162 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 2.0e-44 183.3 179 58.1
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 4.5e-44 182.2 117 77.8
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 2.2e-43 179.9 144 67.4
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 5.0e-43 178.7 177 53.7
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 6.5e-43 178.3 172 62.2
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 8.5e-43 177.9 155 61.9
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 3.2e-42 176.0 222 49.5
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 2.5e-39 166.4 181 52.5
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 5.7e-39 165.2 180 51.1
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 1.3e-38 164.1 208 50.5
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 1.1e-37 161.0 237 43.5
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.8e-37 160.2 110 72.7
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 3.1e-29 132.9 111 62.2
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 4.7e-25 119.0 164 45.7
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 4.0e-24 115.9 161 45.3
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 4.4e-23 112.5 120 64.2
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 2.0e-20 103.6 97 62.9
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 8.8e-16 88.2 105 51.4
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 1.5e-15 87.4 83 61.4
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 2.0e-15 87.0 203 35.5
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 3.5e-12 76.3 59 86.4
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 2.5e-10 70.1 228 31.1
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 4.4e-07 59.3 72 54.2


User provided reference genes

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