Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32512 Brassica carinata HOM05D006748 ORTHO05D008553 6.0e-55 217.2 108 100.0
C09p68960 Brassica napus HOM05D006748 ORTHO05D008553 1.8e-54 215.7 108 99.1
Thhalv10015079m.g Eutrema salsugineum HOM05D006748 ORTHO05D008553 3.0e-54 214.9 108 97.2
CARHR205230 Cardamine hirsuta HOM05D006748 ORTHO05D008553 6.7e-54 213.8 108 97.2
BolC9t59641H Brassica oleracea HOM05D006748 ORTHO05D008553 1.6e-52 209.1 108 97.2
AL6G18300 Arabidopsis lyrata HOM05D006748 ORTHO05D008553 2.1e-52 208.8 108 95.4
BraA02t04939Z Brassica rapa HOM05D006748 ORTHO05D008553 2.8e-52 208.4 107 94.4
AT5G07960 Arabidopsis thaliana HOM05D006748 ORTHO05D008553 4.8e-52 207.6 108 94.4
BcaC03g13204 Brassica carinata HOM05D006748 ORTHO05D008553 8.1e-52 206.8 107 93.5
C02p03380 Brassica napus HOM05D006748 ORTHO05D008553 8.1e-52 206.8 107 93.5
BolC2t06300H Brassica oleracea HOM05D006748 ORTHO05D008553 8.1e-52 206.8 107 93.5
Carub.0006s0686 Capsella rubella HOM05D006748 ORTHO05D008553 8.1e-52 206.8 108 94.4
BcaB05g21592 Brassica carinata HOM05D006748 ORTHO05D008553 1.8e-51 205.7 108 93.5
Aa31LG3G18570 Aethionema arabicum HOM05D006748 ORTHO05D008553 1.2e-50 203.0 108 92.6
Sp6g34980 Schrenkiella parvula HOM05D006748 ORTHO05D008553 4.5e-50 201.1 102 97.1
THA.LOC104818341 Tarenaya hassleriana HOM05D006748 ORTHO05D008553 6.4e-49 197.2 108 88.0
CANSAT80G2841 Cannabis sativa HOM05D006748 ORTHO05D008553 1.7e-41 172.6 105 78.1
Nn3g17423 Nelumbo nucifera HOM05D006748 ORTHO05D008553 2.2e-41 172.2 100 81.0
Potri.015G056300 Populus trichocarpa HOM05D006748 ORTHO05D008553 2.9e-41 171.8 108 76.9
CiPaw.12G007800 Carya illinoinensis HOM05D006748 ORTHO05D008553 3.8e-41 171.4 105 79.0
Haze_07696 Corylus avellana HOM05D006748 ORTHO05D008553 8.4e-41 170.2 105 77.1
Gohir.A12G181700 Gossypium hirsutum HOM05D006748 ORTHO05D008553 8.4e-41 170.2 108 75.9
Gohir.D12G184500 Gossypium hirsutum HOM05D006748 ORTHO05D008553 8.4e-41 170.2 108 75.9
Gorai.008G197900 Gossypium raimondii HOM05D006748 ORTHO05D008553 8.4e-41 170.2 108 75.9
Hma1.2p1_0060F.1_g033230 Hydrangea macrophylla HOM05D006748 ORTHO05D008553 8.4e-41 170.2 107 76.6
Cfa019312 Carpinus fangiana HOM05D006748 ORTHO05D008553 1.1e-40 169.9 105 76.2
Thecc.03G099400 Theobroma cacao HOM05D006748 ORTHO05D008553 1.1e-40 169.9 108 75.0
Eucgr.K02517 Eucalyptus grandis HOM05D006748 ORTHO05D008553 2.5e-40 168.7 105 77.1
Manes.06G086100 Manihot esculenta HOM05D006748 ORTHO05D008553 3.2e-40 168.3 110 76.4
Cpa.g.sc94.24 Carica papaya HOM05D006748 ORTHO05D008553 5.5e-40 167.5 105 77.1
Duzib084G0059 Durio zibethinus HOM05D006748 ORTHO05D008553 7.1e-40 167.2 108 74.1
Dinv10524 Davidia involucrata HOM05D006748 ORTHO05D008553 2.7e-39 165.2 108 75.9
Ciclev10023002m.g Citrus clementina HOM05D006748 ORTHO05D008553 3.5e-39 164.9 105 79.0
TAR622G0828 Trochodendron aralioides HOM05D006748 ORTHO05D008553 4.6e-39 164.5 108 71.3
PSO541G5074 Papaver somniferum HOM05D006748 ORTHO05D008553 7.9e-39 163.7 106 75.5
PSO675G4773 Papaver somniferum HOM05D006748 ORTHO05D008553 7.9e-39 163.7 106 75.5
Potri.012G065500 Populus trichocarpa HOM05D006748 ORTHO05D008553 7.9e-39 163.7 108 73.1
Actinidia35032 Actinidia chinensis HOM05D006748 ORTHO05D008553 1.3e-38 162.9 107 73.8
TWI81G0385 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 1.3e-38 162.9 103 72.8
RcHm_v2.0_Chr7g0182761 Rosa chinensis HOM05D006748 ORTHO05D008553 1.8e-38 162.5 97 76.3
Hund09880 Selenicereus undatus HOM05D006748 ORTHO05D008553 1.8e-38 162.5 107 74.8
ClCG06G015720 Citrullus lanatus HOM05D006748 ORTHO05D008553 2.3e-38 162.2 100 78.0
MD14G1210100 Malus domestica HOM05D006748 ORTHO05D008553 3.0e-38 161.8 99 75.8
QL10p019141 Quercus lobata HOM05D006748 ORTHO05D008553 3.0e-38 161.8 103 74.8
Sed0010236 Sechium edule HOM05D006748 ORTHO05D008553 6.7e-38 160.6 100 76.0
CsaV3_1G002810 Cucumis sativus L. HOM05D006748 ORTHO05D008553 8.7e-38 160.2 100 77.0
Solyc06g069520.3 Solanum lycopersicum HOM05D006748 ORTHO05D008553 8.7e-38 160.2 99 78.8
Sopen06g026810 Solanum pennellii HOM05D006748 ORTHO05D008553 8.7e-38 160.2 99 78.8
CSS0043022 Camellia sinensis var. sinensis HOM05D006748 ORTHO05D008553 1.1e-37 159.8 103 73.8
Atru.chr9.414 Acer truncatum HOM05D006748 ORTHO05D008553 1.9e-37 159.1 105 73.3
FAN13G1579 Fragaria x ananassa HOM05D006748 ORTHO05D008553 2.5e-37 158.7 95 77.9
Oeu008258.1 Olea europaea HOM05D006748 ORTHO05D008553 2.5e-37 158.7 99 76.8
PGR044G1724 Punica granatum HOM05D006748 ORTHO05D008553 2.5e-37 158.7 105 74.3
FvH4_5g14060 Fragaria vesca HOM05D006748 ORTHO05D008553 3.3e-37 158.3 95 77.9
MD06G1200600 Malus domestica HOM05D006748 ORTHO05D008553 4.3e-37 157.9 99 73.7
FvH4_5g14160 Fragaria vesca HOM05D006748 ORTHO05D008553 7.4e-37 157.1 95 76.8
Ca_18978_v3 Cicer arietinum L. HOM05D006748 ORTHO05D008553 9.7e-37 156.8 99 71.7
Peaxi162Scf00702g00422 Petunia axillaris HOM05D006748 ORTHO05D008553 9.7e-37 156.8 99 77.8
Psat5g203080 Pisum sativum HOM05D006748 ORTHO05D008553 1.6e-36 156.0 99 71.7
unitig_750.g28509 Utricularia gibba HOM05D006748 ORTHO05D008553 1.6e-36 156.0 101 75.2
Lalb_Chr09g0334301 Lupinus albus HOM05D006748 ORTHO05D008553 2.2e-36 155.6 100 67.0
Os03g0756800 Oryza sativa ssp. japonica HOM05D006748 ORTHO05D008553 3.7e-36 154.8 100 70.0
Nitab4.5_0005160g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 4.8e-36 154.5 99 75.8
Nitab4.5_0011867g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 4.8e-36 154.5 99 75.8
TPR.G12215 Trifolium pratense HOM05D006748 ORTHO05D008553 4.8e-36 154.5 99 71.7
GSVIVG01007891001 Vitis vinifera HOM05D006748 ORTHO05D008553 4.8e-36 154.5 106 73.6
Hund02598 Selenicereus undatus HOM05D006748 ORTHO05D008553 8.2e-36 153.7 103 70.9
Zm00001eb057720 Zea mays HOM05D006748 ORTHO05D008553 8.2e-36 153.7 106 67.0
HanXRQChr02g0044721 Helianthus annuus HOM05D006748 ORTHO05D008553 1.8e-35 152.5 98 72.4
Lsat_1_v5_gn_1_13560 Lactuca sativa HOM05D006748 ORTHO05D008553 1.8e-35 152.5 99 71.7
Lj1g0012744 Lotus japonicus HOM05D006748 ORTHO05D008553 1.8e-35 152.5 95 72.6
TWI60G0647 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 1.8e-35 152.5 103 69.9
Glyma.06G201800 Glycine max HOM05D006748 ORTHO05D008553 2.4e-35 152.1 100 69.0
HPP92_019473 Vanilla planifolia HOM05D006748 ORTHO05D008553 2.4e-35 152.1 90 77.8
Lj5A105G56 Lonicera japonica HOM05D006748 ORTHO05D008553 3.1e-35 151.8 105 69.5
Phvul.009G193300 Phaseolus vulgaris HOM05D006748 ORTHO05D008553 3.1e-35 151.8 100 69.0
SHI30118 Sapria himalayana HOM05D006748 ORTHO05D008553 5.3e-35 151.0 90 80.0
Medtr3g024170 Medicago truncatula HOM05D006748 ORTHO05D008553 9.0e-35 150.2 100 68.0
Medtr3g024190 Medicago truncatula HOM05D006748 ORTHO05D008553 9.0e-35 150.2 100 68.0
Migut.I00325 Erythranthe guttata HOM05D006748 ORTHO05D008553 1.5e-34 149.4 101 76.2
Sed0016176 Sechium edule HOM05D006748 ORTHO05D008553 2.0e-34 149.1 100 71.0
ECA247G1600 Erigeron canadensis HOM05D006748 ORTHO05D008553 2.6e-34 148.7 98 70.4
SGA_v2.0_scaffold49G18162 Striga asiatica HOM05D006748 ORTHO05D008553 4.5e-34 147.9 91 75.8
Lalb_Chr16g0391551 Lupinus albus HOM05D006748 ORTHO05D008553 7.6e-34 147.1 95 68.4
MSTRG.22979 Avicennia marina HOM05D006748 ORTHO05D008553 1.0e-33 146.7 99 73.7
EL10Ac5g11112 Beta vulgaris HOM05D006748 ORTHO05D008553 1.0e-33 146.7 100 74.0
Cc10_g05660 Coffea canephora HOM05D006748 ORTHO05D008553 2.9e-33 145.2 96 74.0
QL09p026979 Quercus lobata HOM05D006748 ORTHO05D008553 8.5e-33 143.7 135 56.3
Sc12g0006600 Simmondsia chinensis HOM05D006748 ORTHO05D008553 7.9e-31 137.1 85 80.0
Actinidia19003 Actinidia chinensis HOM05D006748 ORTHO05D008553 1.0e-30 136.7 151 51.0
Manes.14G084550 Manihot esculenta HOM05D006748 ORTHO05D008553 1.5e-29 132.9 87 73.6
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 9.7e-29 130.2 87 69.0
SGA_v2.0_scaffold25G10944 Striga asiatica HOM05D006748 ORTHO05D008553 4.8e-28 127.9 80 76.2
vmacro16507 Vaccinium macrocarpon HOM05D006748 ORTHO05D008553 6.3e-28 127.5 86 69.8
Rhsim12G0151700 Rhododendron simsii HOM05D006748 ORTHO05D008553 1.4e-27 126.3 86 72.1
SMO201G0125 Selaginella moellendorffii HOM05D006748 ORTHO05D008553 4.1e-27 124.8 94 62.8
VMungo1309G2295 Vigna mungo HOM05D006748 ORTHO05D008553 4.1e-27 124.8 79 73.4
HPP92_006054 Vanilla planifolia HOM05D006748 ORTHO05D008553 5.3e-27 124.4 89 64.0
arahy.Tifrunner.gnm1.ann1.HPW464 Arachis hypogaea HOM05D006748 ORTHO05D008553 6.9e-27 124.0 87 70.1
CDE05G0122 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 3.4e-26 121.7 105 60.0
BraA10t44914Z Brassica rapa HOM05D006748 ORTHO05D008553 2.2e-25 119.0 58 100.0
Mapoly0019s0070 Marchantia polymorpha HOM05D006748 ORTHO05D008553 6.5e-25 117.5 88 64.8
A10p28650 Brassica napus HOM05D006748 ORTHO05D008553 1.6e-23 112.8 55 100.0
ATR0064G062 Amborella trichopoda HOM05D006748 ORTHO05D008553 2.7e-23 112.1 86 64.0
AUR62008510 Chenopodium quinoa HOM05D006748 ORTHO05D008553 7.9e-23 110.5 80 70.0
Sabra15G0081500 Salix brachista HOM05D006748 ORTHO05D008553 1.4e-22 109.8 85 63.5
AUR62021580 Chenopodium quinoa HOM05D006748 ORTHO05D008553 3.0e-22 108.6 77 71.4
CBR_g90015 Chara braunii HOM05D006748 ORTHO05D008553 3.3e-21 105.1 90 53.3
Pp3c14_26790 Physcomitrium patens HOM05D006748 ORTHO05D008553 5.7e-21 104.4 99 52.5
HanXRQChr16g0510351 Helianthus annuus HOM05D006748 ORTHO05D008553 3.7e-20 101.7 69 68.1
MELO3C017217.2 Cucumis melo HOM05D006748 ORTHO05D008553 9.1e-19 97.1 56 82.1
AagrBONN_evm.TU.Sc2ySwM_117.1931 Anthoceros agrestis HOM05D006748 ORTHO05D008553 2.0e-18 95.9 75 60.0
HanXRQChr14g0449601 Helianthus annuus HOM05D006748 ORTHO05D008553 5.2e-14 81.3 56 69.6
COL.COLO4_37587 Corchorus olitorius HOM05D006748 ORTHO05D008553 6.3e-12 74.3 53 66.0
CDE02G4382 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 1.6e-07 59.7 53 56.6
SEGI_29622 Sequoiadendron giganteum HOM05D006748 ORTHO05D008553 1.6e-07 59.7 46 58.7
MCO16G157 Micromonas commoda HOM05D006748 ORTHO05D008553 1.4e-06 56.6 88 31.8


User provided reference genes

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